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It is implemented as a plugin for VMD (Visual Molecular Dynamics), which is distributed by the NIH Resource for Macromolecular Modeling and Bioinformatics at the University of Illinois.<\/jats:p>\n               <jats:p>Availability: Both binary and source code downloads for VMD 1.83, which includes Multiple Alignment, are available from . The Multidimensional QR factorization algorithm is available at<\/jats:p>\n               <jats:p>Contact: \u00a0multiseq@scs.uiuc.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/bti825","type":"journal-article","created":{"date-parts":[[2005,12,9]],"date-time":"2005-12-09T01:43:34Z","timestamp":1134092614000},"page":"504-506","source":"Crossref","is-referenced-by-count":152,"title":["<i>Multiple Alignment<\/i> of protein structures and sequences for VMD"],"prefix":"10.1093","volume":"22","author":[{"given":"John","family":"Eargle","sequence":"first","affiliation":[{"name":"Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign 1 \u00a0 1 \u00a0 \u00a0 607 South Mathews Avenue, Urbana, IL 61801, USA"}]},{"given":"Dan","family":"Wright","sequence":"additional","affiliation":[{"name":"Graduate School of Library and Information Sciences, University of Illinois at Urbana-Champaign 2 \u00a0 2 \u00a0 \u00a0 501 Daniel Street, Champaign, IL 61820, USA"},{"name":"Department of Chemistry, University of Illinois at Urbana-Champaign 3 \u00a0 3 \u00a0 \u00a0 505 South Mathews Avenue, Urbana, IL 61801, USA"}]},{"given":"Zaida","family":"Luthey-Schulten","sequence":"additional","affiliation":[{"name":"Center for Biophysics and Computational Biology, University of Illinois at Urbana-Champaign 1 \u00a0 1 \u00a0 \u00a0 607 South Mathews Avenue, Urbana, IL 61801, USA"},{"name":"Department of Chemistry, University of Illinois at Urbana-Champaign 3 \u00a0 3 \u00a0 \u00a0 505 South Mathews Avenue, Urbana, IL 61801, USA"}]}],"member":"286","published-online":{"date-parts":[[2005,12,8]]},"reference":[{"key":"2023012408495445100_b1","doi-asserted-by":"crossref","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","article-title":"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs","volume":"25","author":"Altschul","year":"1997","journal-title":"Nucleic Acids Res."},{"key":"2023012408495445100_b2","doi-asserted-by":"crossref","first-page":"254","DOI":"10.1093\/nar\/28.1.254","article-title":"The ASTRAL compendium for sequence and structure analysis","volume":"28","author":"Brenner","year":"2000","journal-title":"Nucleic Acids Res."},{"key":"2023012408495445100_b3","doi-asserted-by":"crossref","first-page":"4673","DOI":"10.1093\/nar\/22.22.4673","article-title":"CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice","volume":"22","author":"Higgins","year":"1994","journal-title":"Nucleic Acids Res."},{"key":"2023012408495445100_b4","doi-asserted-by":"crossref","first-page":"33","DOI":"10.1016\/0263-7855(96)00018-5","article-title":"VMD\u2013Visual Molecular Dynamics","volume":"14","author":"Humphrey","year":"1996","journal-title":"J. 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