{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,8,5]],"date-time":"2024-08-05T21:19:58Z","timestamp":1722892798298},"reference-count":6,"publisher":"Oxford University Press (OUP)","issue":"5","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2006,3,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: ANDY (seArch coordination aND analYsis) is a set of Perl programs and modules for distributing large biological database searches, and in general any sequence of commands, across the nodes of a Linux computer cluster. ANDY is compatible with several commonly used distributed resource management (DRM) systems, and it can be easily extended to new DRMs. A distinctive feature of ANDY is the choice of either dedicated or fair-use operation: ANDY is almost as efficient as single-purpose tools that require a dedicated cluster, but it runs on a general-purpose cluster along with any other jobs scheduled by a DRM. Other features include communication through named pipes for performance, flexible customizable routines for error-checking and summarizing results, and multiple fault-tolerance mechanisms.<\/jats:p>\n               <jats:p>Availability: ANDY is freely available and can be obtained from<\/jats:p>\n               <jats:p>Contact: \u00a0brenner@compbio.berkeley.edu<\/jats:p>\n               <jats:p>Supplementary information: Supplemental data, figures, and a more detailed overview of the software are found at<\/jats:p>","DOI":"10.1093\/bioinformatics\/btk020","type":"journal-article","created":{"date-parts":[[2006,1,6]],"date-time":"2006-01-06T01:39:12Z","timestamp":1136511552000},"page":"618-620","source":"Crossref","is-referenced-by-count":2,"title":["ANDY: a general, fault-tolerant tool for database searching on computer clusters"],"prefix":"10.1093","volume":"22","author":[{"given":"Andrew","family":"Smith","sequence":"first","affiliation":[{"name":"Department of Plant and Microbial Biology 1 \u00a0 1 \u00a0 \u00a0 461A Koshland Hall \u00a0 \u00a0 Berkeley, CA 94720-3102, USA"},{"name":"University of California 1 \u00a0 1 \u00a0 \u00a0 461A Koshland Hall \u00a0 \u00a0 Berkeley, CA 94720-3102, USA"},{"name":"Berkeley Structural Genomics Center, Physical Biosciences Division, Lawrence Berkeley National Laboratory 2 \u00a0 2 \u00a0 \u00a0 Berkeley, CA 94720, USA"},{"name":"Department of Molecular Biophysics and Biochemistry, Yale University 3 \u00a0 3 \u00a0 \u00a0 New Haven, CT 06520, USA"},{"name":"Department of Computer Science, Yale University 4 \u00a0 4 \u00a0 \u00a0 New Haven, CT 06520, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"John-Marc","family":"Chandonia","sequence":"additional","affiliation":[{"name":"Berkeley Structural Genomics Center, Physical Biosciences Division, Lawrence Berkeley National Laboratory 2 \u00a0 2 \u00a0 \u00a0 Berkeley, CA 94720, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Steven E.","family":"Brenner","sequence":"additional","affiliation":[{"name":"Department of Plant and Microbial Biology 1 \u00a0 1 \u00a0 \u00a0 461A Koshland Hall \u00a0 \u00a0 Berkeley, CA 94720-3102, USA"},{"name":"University of California 1 \u00a0 1 \u00a0 \u00a0 461A Koshland Hall \u00a0 \u00a0 Berkeley, CA 94720-3102, USA"},{"name":"Berkeley Structural Genomics Center, Physical Biosciences Division, Lawrence Berkeley National Laboratory 2 \u00a0 2 \u00a0 \u00a0 Berkeley, CA 94720, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2006,1,5]]},"reference":[{"key":"2023012408531589400_b1","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. 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