{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,28]],"date-time":"2025-10-28T14:38:52Z","timestamp":1761662332633},"reference-count":12,"publisher":"Oxford University Press (OUP)","issue":"6","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2006,3,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>With the production of whole genome microarray chips the ability arises to investigate whether the regulation of particular groups of genes may be influenced by their chromosomal localization. Chromosome Co-Localization probability calculator (ChroCoLoc) is a publicly available web-based tool for the analysis of co-localization of co-expressed genes identified by microarray experiments.<\/jats:p>\n               <jats:p>Availability: \u00a0<\/jats:p>\n               <jats:p>Contact: \u00a0blake@ebi.ac.uk<\/jats:p>","DOI":"10.1093\/bioinformatics\/btk022","type":"journal-article","created":{"date-parts":[[2005,12,24]],"date-time":"2005-12-24T01:13:44Z","timestamp":1135386824000},"page":"765-767","source":"Crossref","is-referenced-by-count":7,"title":["ChroCoLoc: an application for calculating the probability of co-localization of microarray gene expression"],"prefix":"10.1093","volume":"22","author":[{"given":"Jonathon","family":"Blake","sequence":"first","affiliation":[{"name":"EMBL Meyerhofstr 1 \u00a0 1 \u00a0 \u00a0 1 D-69117 Heidelberg, Germany"},{"name":"EMBL-European Bioinformatics Institute 2 \u00a0 2 \u00a0 \u00a0 Wellcome Trust Genome Campus, Hinxton, Cambridge, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Christian","family":"Schwager","sequence":"additional","affiliation":[{"name":"EMBL Meyerhofstr 1 \u00a0 1 \u00a0 \u00a0 1 D-69117 Heidelberg, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Misha","family":"Kapushesky","sequence":"additional","affiliation":[{"name":"EMBL-European Bioinformatics Institute 2 \u00a0 2 \u00a0 \u00a0 Wellcome Trust Genome Campus, Hinxton, Cambridge, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alvis","family":"Brazma","sequence":"additional","affiliation":[{"name":"EMBL-European Bioinformatics Institute 2 \u00a0 2 \u00a0 \u00a0 Wellcome Trust Genome Campus, Hinxton, Cambridge, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2005,12,23]]},"reference":[{"key":"2023012408532975400_b1","doi-asserted-by":"crossref","first-page":"4736","DOI":"10.1158\/0008-5472.CAN-04-0679","article-title":"Embryonic stem cell-like features of testicular carcinoma in situ revealed by genome-wide gene expression profiling","volume":"64","author":"Almstrup","year":"2004","journal-title":"Cancer Res."},{"key":"2023012408532975400_b2","doi-asserted-by":"crossref","first-page":"151","DOI":"10.1186\/1471-2105-5-151","article-title":"Caryoscope: an open source Java application for viewing microarray data in a genomic context","volume":"5","author":"Awad","year":"2004","journal-title":"BMC Bioinformatics"},{"key":"2023012408532975400_b3","doi-asserted-by":"crossref","first-page":"68","DOI":"10.1186\/1471-2105-5-68","article-title":"Detection of chromosomal regions showing differential gene expression in human skeletal muscle and in alveolar rhabdomyosarcoma","volume":"5","author":"Bisognin","year":"2004","journal-title":"BMC Bioinformatics"},{"key":"2023012408532975400_b4","doi-asserted-by":"crossref","first-page":"1289","DOI":"10.1126\/science.1056794","article-title":"The human transcriptome map: clustering of highly expressed genes in chromosomal domains","volume":"291","author":"Caron","year":"2001","journal-title":"Science"},{"key":"2023012408532975400_b5","doi-asserted-by":"crossref","first-page":"1798","DOI":"10.1093\/nar\/gkh507","article-title":"Calculating the statistical significance of physical clusters of co-regulated genes in the genome: the role of chromatin in domain-wide gene regulation","volume":"32","author":"Chang","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"2023012408532975400_b6","doi-asserted-by":"crossref","first-page":"3775","DOI":"10.1093\/nar\/gkg624","article-title":"Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate","volume":"13","author":"Draghici","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"2023012408532975400_b7","doi-asserted-by":"crossref","first-page":"724","DOI":"10.1038\/nature03466","article-title":"Generation and annotation of the DNA sequences of human chromosomes 2 and 4","volume":"434","author":"Hillier","year":"2005","journal-title":"Nature"},{"key":"2023012408532975400_b8","doi-asserted-by":"crossref","first-page":"R70","DOI":"10.1186\/gb-2003-4-10-r70","article-title":"Identifying biological themes within lists of genes with EASE","volume":"4","author":"Hosack","year":"2003","journal-title":"Genome Biol."},{"key":"2023012408532975400_b9","doi-asserted-by":"crossref","first-page":"W465-W470","DOI":"10.1093\/nar\/gkh470","article-title":"Expression Profiler: next generation\u2014an online platform for analysis of microarray data","volume":"32","author":"Kapushesky","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"2023012408532975400_b10","doi-asserted-by":"crossref","first-page":"160","DOI":"10.1101\/gr.1645104","article-title":"EnsMart: a generic system for fast and flexible access to biological data","volume":"14","author":"Kasprzyk","year":"2004","journal-title":"Genome Res."},{"key":"2023012408532975400_b11","doi-asserted-by":"crossref","first-page":"2112","DOI":"10.1093\/bioinformatics\/bti183","article-title":"MACAT\u2014microarray chromosome analysis tool","volume":"21","author":"T\u00f6edling","year":"2005","journal-title":"Bioinformatics"},{"key":"2023012408532975400_b12","article-title":"Hypergeometric Distribution","author":"Weisstein"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/22\/6\/765\/48839769\/bioinformatics_22_6_765.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/22\/6\/765\/48839769\/bioinformatics_22_6_765.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,24]],"date-time":"2023-01-24T09:32:31Z","timestamp":1674552751000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/22\/6\/765\/295463"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2005,12,23]]},"references-count":12,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2006,3,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btk022","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2006,3,15]]},"published":{"date-parts":[[2005,12,23]]}}}