{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,23]],"date-time":"2025-10-23T16:34:46Z","timestamp":1761237286636},"reference-count":3,"publisher":"Oxford University Press (OUP)","issue":"8","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2006,4,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: CellML and SBML are XML-based languages for storage and exchange of molecular biological and physiological reaction models. They use very similar subsets of MathML to specify the mathematical aspects of the models. CellML2SBML is implemented as a suite of XSLT stylesheets that, when applied consecutively, convert models expressed in CellML into SBML without significant loss of information. The converter is based on the most recent stable versions of the languages (CellML version 1.1; SBML Level 2 Version 1), and the XSLT used in the stylesheets adheres to the XSLT version 1.0 specification. Of all 306 models in the CellML repository in April 2005, CellML2SBML converted 91% automatically into SBML. Minor manual changes to the unit definitions in the originals raised the percentage of successful conversions to 96%.<\/jats:p>\n               <jats:p>Availability: \u00a0<\/jats:p>\n               <jats:p>Contact: \u00a0m.j.1.schilstra@herts.ac.uk<\/jats:p>\n               <jats:p>Supplementary information: Instructions for use and further documentation available on<\/jats:p>","DOI":"10.1093\/bioinformatics\/btl047","type":"journal-article","created":{"date-parts":[[2006,2,11]],"date-time":"2006-02-11T01:23:56Z","timestamp":1139621036000},"page":"1018-1020","source":"Crossref","is-referenced-by-count":22,"title":["CellML2SBML: conversion of CellML into SBML"],"prefix":"10.1093","volume":"22","author":[{"given":"Maria J.","family":"Schilstra","sequence":"first","affiliation":[{"name":"Biological and Neural Computation Group, STRI, University of Hertfordshire 1 \u00a0 1 \u00a0 \u00a0 Hatfield AL10 9AB, UK"}]},{"given":"Lu","family":"Li","sequence":"additional","affiliation":[{"name":"Computational Neurobiology, EMBL-EBI 2 \u00a0 2 \u00a0 \u00a0 Wellcome-Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]},{"given":"Joanne","family":"Matthews","sequence":"additional","affiliation":[{"name":"Biological and Neural Computation Group, STRI, University of Hertfordshire 3 \u00a0 3 \u00a0 \u00a0 Hatfield AL10 9AB, UK"}]},{"given":"Andrew","family":"Finney","sequence":"additional","affiliation":[{"name":"Physiomics PLC, Magdalen Centre 4 \u00a0 4 \u00a0 \u00a0 Oxford Science Park, Oxford OX4 4GA, UK"}]},{"given":"Michael","family":"Hucka","sequence":"additional","affiliation":[{"name":"Control and Dynamical Systems, California Institute of Technology 5 \u00a0 5 \u00a0 \u00a0 Pasadena, CA 91125, USA"}]},{"given":"Nicolas","family":"Le Nov\u00e8re","sequence":"additional","affiliation":[{"name":"Computational Neurobiology, EMBL-EBI 2 \u00a0 2 \u00a0 \u00a0 Wellcome-Trust Genome Campus, Hinxton, Cambridge CB10 1SD, UK"}]}],"member":"286","published-online":{"date-parts":[[2006,2,10]]},"reference":[{"key":"2023012409205381100_b1","doi-asserted-by":"crossref","first-page":"740","DOI":"10.1177\/0037549703040939","article-title":"An overview of CellML 1.1, a biological model description language","volume":"79","author":"Cuellar","year":"2003","journal-title":"Simulation"},{"key":"2023012409205381100_b2","doi-asserted-by":"crossref","first-page":"1472","DOI":"10.1042\/bst0311472","article-title":"Systems Biology Markup Language: level 2 and beyond","volume":"31","author":"Finney","year":"2003","journal-title":"Biochem. Soc. Trans."},{"key":"2023012409205381100_b3","doi-asserted-by":"crossref","first-page":"524","DOI":"10.1093\/bioinformatics\/btg015","article-title":"The Systems Biology Markup Language (SBML): a medium for representation and exchange of biochemical network models","volume":"19","author":"Hucka","year":"2003","journal-title":"Bioinformatics"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/22\/8\/1018\/48840112\/bioinformatics_22_8_1018.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/22\/8\/1018\/48840112\/bioinformatics_22_8_1018.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,24]],"date-time":"2023-01-24T09:25:05Z","timestamp":1674552305000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/22\/8\/1018\/227430"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006,2,10]]},"references-count":3,"journal-issue":{"issue":"8","published-print":{"date-parts":[[2006,4,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btl047","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2006,4,15]]},"published":{"date-parts":[[2006,2,10]]}}}