{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,21]],"date-time":"2025-10-21T14:53:45Z","timestamp":1761058425743},"reference-count":9,"publisher":"Oxford University Press (OUP)","issue":"10","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2006,5,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: \u00a0SScore is an R package that facilitates the comparison of gene expression between Affymetrix GeneChips using the S-score algorithm. The S-score algorithm uses probe level data directly to assess differences in gene expression, without requiring a preliminary separate step of probe set expression summary estimation. Therefore, the algorithm avoids introduction of error associated with the expression summary estimation process and has been demonstrated to improve the accuracy of identifying differentially expressed genes. The S-score produces accurate results even when few or no replicates are available.<\/jats:p>\n               <jats:p>Availability: The R package SScore is available from Bioconductor at<\/jats:p>\n               <jats:p>Contact: \u00a0rkennedy@vcu.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/btl108","type":"journal-article","created":{"date-parts":[[2006,3,31]],"date-time":"2006-03-31T01:29:31Z","timestamp":1143768571000},"page":"1272-1274","source":"Crossref","is-referenced-by-count":29,"title":["<i>SScore<\/i>: an R package for detecting differential gene expression without gene expression summaries"],"prefix":"10.1093","volume":"22","author":[{"given":"Richard E.","family":"Kennedy","sequence":"first","affiliation":[{"name":"Department of Biostatistics, Virginia Commonwealth University 1 \u00a0 1 \u00a0 \u00a0 Box 980032, Richmond, VA 23298-0032, USA"}]},{"given":"Robnet T.","family":"Kerns","sequence":"additional","affiliation":[{"name":"Department of Pharmacology and Toxicology, Virginia Commonwealth University 2 \u00a0 2 \u00a0 \u00a0 Box 980032, Richmond, VA 23298-0032, USA"}]},{"given":"Xiangrong","family":"Kong","sequence":"additional","affiliation":[{"name":"Department of Biostatistics, Virginia Commonwealth University 1 \u00a0 1 \u00a0 \u00a0 Box 980032, Richmond, VA 23298-0032, USA"}]},{"given":"Kellie J.","family":"Archer","sequence":"additional","affiliation":[{"name":"Department of Biostatistics, Virginia Commonwealth University 1 \u00a0 1 \u00a0 \u00a0 Box 980032, Richmond, VA 23298-0032, USA"},{"name":"Center for the Study of Biological Complexity, Virginia Commonwealth University 4 \u00a0 4 \u00a0 \u00a0 Box 980032, Richmond, VA 23298-0032, USA"}]},{"given":"Michael F.","family":"Miles","sequence":"additional","affiliation":[{"name":"Department of Pharmacology and Toxicology, Virginia Commonwealth University 2 \u00a0 2 \u00a0 \u00a0 Box 980032, Richmond, VA 23298-0032, USA"},{"name":"Department of Neurology, Virginia Commonwealth University 3 \u00a0 3 \u00a0 \u00a0 Box 980032, Richmond, VA 23298-0032, USA"},{"name":"Center for the Study of Biological Complexity, Virginia Commonwealth University 4 \u00a0 4 \u00a0 \u00a0 Box 980032, Richmond, VA 23298-0032, USA"}]}],"member":"286","published-online":{"date-parts":[[2006,3,30]]},"reference":[{"key":"2023012408301825800_b1","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1093\/bioinformatics\/btg405","article-title":"Affy\u2014analysis of Affymetrix GeneChip data at the probe level","volume":"20","author":"Gautier","year":"2004","journal-title":"Bioinformatics"},{"key":"2023012408301825800_b2","doi-asserted-by":"crossref","first-page":"R80","DOI":"10.1186\/gb-2004-5-10-r80","article-title":"Bioconductor: open software development for computational biology and bioinformatics","volume":"5","author":"Gentleman","year":"2004","journal-title":"Genome Biol."},{"key":"2023012408301825800_b3","doi-asserted-by":"crossref","first-page":"1585","DOI":"10.1093\/bioinformatics\/18.12.1585","article-title":"Robust estimators for expression analysis","volume":"18","author":"Hubbell","year":"2002","journal-title":"Bioinformatics"},{"key":"2023012408301825800_b4","doi-asserted-by":"crossref","first-page":"e15","DOI":"10.1093\/nar\/gng015","article-title":"Summaries of Affymetrix GeneChip probe level data","volume":"31","author":"Irizarry","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"2023012408301825800_b5","doi-asserted-by":"crossref","first-page":"274","DOI":"10.1016\/S1046-2023(03)00156-7","article-title":"Application of the S-score algorithm for analysis of oligonucleotide microarrays","volume":"31","author":"Kerns","year":"2003","journal-title":"Methods"},{"key":"2023012408301825800_b6","article-title":"Informatics tools: Expression data analysis","author":"Miles","year":"2003"},{"key":"2023012408301825800_b7","volume-title":"R: A Language and Environment for Statistical Computing Version 2.2.0.","author":"R Development Core Team","year":"2005"},{"key":"2023012408301825800_b8","doi-asserted-by":"crossref","first-page":"5116","DOI":"10.1073\/pnas.091062498","article-title":"Significance analysis of microarrays applied to the ionizing radiation response","volume":"98","author":"Tusher","year":"2001","journal-title":"Proc. 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