{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,7,6]],"date-time":"2024-07-06T15:57:18Z","timestamp":1720281438426},"reference-count":8,"publisher":"Oxford University Press (OUP)","issue":"18","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2006,9,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: GeneRecon is a tool for fine-scale association mapping using a coalescence model. GeneRecon takes as input case\u2013control data from phased or unphased SNP and microsatellite genotypes. The posterior distribution of disease locus position is obtained by Metropolis-Hastings sampling in the state space of genealogies. Input format, search strategy and the sampled statistics can be configured through the Guile Scheme programming language embedded in GeneRecon, making GeneRecon highly configurable.<\/jats:p>\n               <jats:p>Availability: The source code for GeneRecon, written in C++ and Scheme, is available under the GNU General Public License (GPL) at<\/jats:p>\n               <jats:p>Contact: \u00a0mailund@birc.au.dk<\/jats:p>","DOI":"10.1093\/bioinformatics\/btl153","type":"journal-article","created":{"date-parts":[[2006,4,22]],"date-time":"2006-04-22T00:27:33Z","timestamp":1145665653000},"page":"2317-2318","source":"Crossref","is-referenced-by-count":6,"title":["GeneRecon\u2014a coalescent based tool for fine-scale association mapping"],"prefix":"10.1093","volume":"22","author":[{"given":"Thomas","family":"Mailund","sequence":"first","affiliation":[{"name":"Bioinformatics Research Center, University of Aarhus 1 \u00a0 1 \u00a0 \u00a0 H\u00f8egh-Guldbergs Gade 10, DK-8000 \u00c5rhus C, Denmark"},{"name":"Bioinformatics ApS 2 \u00a0 2 \u00a0 \u00a0 H\u00f8egh-Guldbergs Gade 10, DK-8000 \u00c5rhus C, Denmark"},{"name":"Department of Statistics, University of Oxford 4 \u00a0 4 \u00a0 \u00a0 Oxford, OX1 3TG, UK"}]},{"given":"Mikkel H.","family":"Schierup","sequence":"additional","affiliation":[{"name":"Bioinformatics Research Center, University of Aarhus 1 \u00a0 1 \u00a0 \u00a0 H\u00f8egh-Guldbergs Gade 10, DK-8000 \u00c5rhus C, Denmark"},{"name":"Bioinformatics ApS 2 \u00a0 2 \u00a0 \u00a0 H\u00f8egh-Guldbergs Gade 10, DK-8000 \u00c5rhus C, Denmark"}]},{"given":"Christian N. S.","family":"Pedersen","sequence":"additional","affiliation":[{"name":"Bioinformatics Research Center, University of Aarhus 1 \u00a0 1 \u00a0 \u00a0 H\u00f8egh-Guldbergs Gade 10, DK-8000 \u00c5rhus C, Denmark"},{"name":"Bioinformatics ApS 2 \u00a0 2 \u00a0 \u00a0 H\u00f8egh-Guldbergs Gade 10, DK-8000 \u00c5rhus C, Denmark"},{"name":"Department of Computer Science, University of Aarhus 3 \u00a0 3 \u00a0 \u00a0 IT-Parken, DK-8200 \u00c5rhus N, Denmark"}]},{"given":"Jesper N.","family":"Madsen","sequence":"additional","affiliation":[{"name":"Bioinformatics ApS 2 \u00a0 2 \u00a0 \u00a0 H\u00f8egh-Guldbergs Gade 10, DK-8000 \u00c5rhus C, Denmark"}]},{"given":"Jotun","family":"Hein","sequence":"additional","affiliation":[{"name":"Department of Statistics, University of Oxford 4 \u00a0 4 \u00a0 \u00a0 Oxford, OX1 3TG, UK"}]},{"given":"Leif","family":"Schauser","sequence":"additional","affiliation":[{"name":"Bioinformatics Research Center, University of Aarhus 1 \u00a0 1 \u00a0 \u00a0 H\u00f8egh-Guldbergs Gade 10, DK-8000 \u00c5rhus C, Denmark"},{"name":"Bioinformatics ApS 2 \u00a0 2 \u00a0 \u00a0 H\u00f8egh-Guldbergs Gade 10, DK-8000 \u00c5rhus C, Denmark"}]}],"member":"286","published-online":{"date-parts":[[2006,4,21]]},"reference":[{"key":"2023012409213949100_b1","doi-asserted-by":"crossref","DOI":"10.1201\/b14835","volume-title":"Markov Chain Monte Carlo in Practice.","author":"Gilks","year":"1995"},{"key":"2023012409213949100_b2","volume-title":"Gene Genealogies, Variation and Evolution: A Primer in Coalescent Theory","author":"Hein","year":"2005"},{"key":"2023012409213949100_b3","doi-asserted-by":"crossref","first-page":"1073","DOI":"10.1126\/science.2570460","article-title":"Identification of the cystic fibrosis gene: genetic analysis","volume":"245","author":"Kerem","year":"1989","journal-title":"Science"},{"key":"2023012409213949100_b4","doi-asserted-by":"crossref","first-page":"1716","DOI":"10.1101\/gr.194801","article-title":"Bayesian analysis of haplotypes for linkage disequilibrium mapping","volume":"11","author":"Liu","year":"2001","journal-title":"Genome Res."},{"key":"2023012409213949100_b5","volume-title":"Monte Carlo Strategies in Scientific Computing","author":"Liu","year":"2001"},{"key":"2023012409213949100_b6","article-title":"Initial experiences with GeneRecon on MiG","author":"Mailund","year":"2005"},{"key":"2023012409213949100_b7","doi-asserted-by":"crossref","first-page":"252","DOI":"10.1186\/1471-2105-6-252","article-title":"CoaSim: a flexible environment for simulating genetic data under coalescent models","volume":"6","author":"Mailund","year":"2005","journal-title":"BMC Bioinformatics"},{"key":"2023012409213949100_b8","doi-asserted-by":"crossref","first-page":"686","DOI":"10.1086\/339271","article-title":"Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies","volume":"70","author":"Morris","year":"2002","journal-title":"Am. 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