{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T05:27:06Z","timestamp":1674624426187},"reference-count":18,"publisher":"Oxford University Press (OUP)","issue":"14","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2006,7,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: We present a web service allowing to automatically assign sequences to homologous gene families from a set of databases. After identification of the most similar gene family to the query sequence, this sequence is added to the whole alignment and the phylogenetic tree of the family is rebuilt. Thus, the phylogenetic position of the query sequence in its gene family can be easily identified.<\/jats:p>\n               <jats:p>Availability: \u00a0<\/jats:p>\n               <jats:p>Contact: \u00a0arigon@biomserv.univ-lyon1.fr<\/jats:p>\n               <jats:p>Supplementary Information: Supplementary Data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btl179","type":"journal-article","created":{"date-parts":[[2006,5,9]],"date-time":"2006-05-09T01:39:44Z","timestamp":1147138784000},"page":"1786-1787","source":"Crossref","is-referenced-by-count":5,"title":["HoSeqI: automated homologous sequence identification in gene family databases"],"prefix":"10.1093","volume":"22","author":[{"given":"Anne-Muriel","family":"Arigon","sequence":"first","affiliation":[{"name":"Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, UMR CNRS 5558, Universit\u00e9 Claude-Bernard Lyon 1, 43 boulevard du 11 Novembre 1918 \u00a0 69622 Villeurbanne Cedex, France"}]},{"given":"Guy","family":"Perri\u00e8re","sequence":"additional","affiliation":[{"name":"Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, UMR CNRS 5558, Universit\u00e9 Claude-Bernard Lyon 1, 43 boulevard du 11 Novembre 1918 \u00a0 69622 Villeurbanne Cedex, France"}]},{"given":"Manolo","family":"Gouy","sequence":"additional","affiliation":[{"name":"Laboratoire de Biom\u00e9trie et Biologie \u00c9volutive, UMR CNRS 5558, Universit\u00e9 Claude-Bernard Lyon 1, 43 boulevard du 11 Novembre 1918 \u00a0 69622 Villeurbanne Cedex, France"}]}],"member":"286","published-online":{"date-parts":[[2006,5,8]]},"reference":[{"key":"2023012409012585300_b1","doi-asserted-by":"crossref","first-page":"179","DOI":"10.1142\/S0218213097000104","article-title":"Fast and sound two-step algorithms for multiple alignment of nucleic sequences","volume":"6","author":"Abdedda\u00efm","year":"1997","journal-title":"Int. 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Comput. Biol."},{"key":"2023012409012585300_b6","doi-asserted-by":"crossref","first-page":"1785","DOI":"10.1128\/JCM.41.4.1785-1787.2003","article-title":"BIBI, a bioinformatic bacterial identification tool","volume":"41","author":"Devulder","year":"2003","journal-title":"J. Clin. Microbiol."},{"key":"2023012409012585300_b7","unstructured":"Dufayard\n              J.F.\n            \n          \n          Incremental algorithms for the alignment and the phylogeny of large homologous sequence families. Ph.D\n          2004\n          Grenoble, France\n          Thesis, Joseph Fourier University"},{"key":"2023012409012585300_b8","first-page":"13","article-title":"HOVERGEN: database and software for comparative analysis of homologous vertebrate genes","volume-title":"Bioinformatics Databases and Systems","author":"Duret","year":"1999"},{"key":"2023012409012585300_b9","doi-asserted-by":"crossref","first-page":"113","DOI":"10.1186\/1471-2105-5-113","article-title":"MUSCLE: a multiple sequence alignment method with reduced time and space complexity","volume":"5","author":"Edgar","year":"2004","journal-title":"BMC Bioinformatics"},{"key":"2023012409012585300_b10","doi-asserted-by":"crossref","first-page":"685","DOI":"10.1093\/oxfordjournals.molbev.a025808","article-title":"BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data","volume":"14","author":"Gascuel","year":"1997","journal-title":"Mol. Biol. 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