{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,26]],"date-time":"2025-10-26T14:06:41Z","timestamp":1761487601094},"reference-count":6,"publisher":"Oxford University Press (OUP)","issue":"14","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2006,7,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: TRFMA provides a Web environment for analyzing T-RFLP results based on molecular weights of the fragments, rather than the numbers of nucleotides, to increase accuracy. The 16S rRNA data are saved as an XML file containing around 650 sequences (light version) and a MySQL database containing around 50\u2009000 sequences (full version), which are connected to Web server via PHP5 and manipulated on an Internet browser.<\/jats:p>\n               <jats:p>Availability: TRFMA is freely available at and can be downloaded from the same site.<\/jats:p>\n               <jats:p>Contact: \u00a0yosh@dent.kyushu-u.ac.jp<\/jats:p>","DOI":"10.1093\/bioinformatics\/btl186","type":"journal-article","created":{"date-parts":[[2006,5,19]],"date-time":"2006-05-19T00:24:05Z","timestamp":1147998245000},"page":"1788-1789","source":"Crossref","is-referenced-by-count":14,"title":["TRFMA: a web-based tool for terminal restriction fragment length polymorphism analysis based on molecular weight"],"prefix":"10.1093","volume":"22","author":[{"given":"Yoshio","family":"Nakano","sequence":"first","affiliation":[{"name":"Department of Preventive Dentistry, Faculty of Dental Science, Kyushu University \u00a0 Fukuoka-shi, Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Toru","family":"Takeshita","sequence":"additional","affiliation":[{"name":"Department of Preventive Dentistry, Faculty of Dental Science, Kyushu University \u00a0 Fukuoka-shi, Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Yoshihisa","family":"Yamashita","sequence":"additional","affiliation":[{"name":"Department of Preventive Dentistry, Faculty of Dental Science, Kyushu University \u00a0 Fukuoka-shi, Japan"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2006,5,18]]},"reference":[{"key":"2023012409010325600_b1","doi-asserted-by":"crossref","first-page":"190","DOI":"10.1128\/AEM.67.1.190-197.2001","article-title":"Phylogenetic specificity and reproducibility and new method for analysis terminal restriction fragment profiles of 16S rRNA gene from bacterial communities","volume":"67","author":"Dunbar","year":"2001","journal-title":"Appl. Environ. Microbiol."},{"key":"2023012409010325600_b2","doi-asserted-by":"crossref","first-page":"121","DOI":"10.1016\/S0167-7012(03)00003-4","article-title":"Variation between observed and true terminal restriction fragment length is dependent on true TRF length and purine content","volume":"54","author":"Kaplan","year":"2003","journal-title":"J. Microbiol. Methods"},{"key":"2023012409010325600_b3","doi-asserted-by":"crossref","first-page":"6768","DOI":"10.1128\/AEM.69.11.6768-6776.2003","article-title":"Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities","volume":"69","author":"Kent","year":"2003","journal-title":"Appl. Environ. Microbiol."},{"key":"2023012409010325600_b4","doi-asserted-by":"crossref","first-page":"308","DOI":"10.1016\/S0076-6879(05)97018-3","article-title":"Culture-independent microbial community analysis with terminal restriction fragment length polymorphism","volume":"397","author":"Marsh","year":"2005","journal-title":"Methods Enzymol."},{"key":"2023012409010325600_b5","doi-asserted-by":"crossref","first-page":"3770","DOI":"10.1128\/JB.183.12.3770-3783.2001","article-title":"Bacterial diversity in human subgingival plaque","volume":"183","author":"Paster","year":"2001","journal-title":"J. Bacteriol."},{"key":"2023012409010325600_b6","doi-asserted-by":"crossref","first-page":"375","DOI":"10.1016\/j.femsec.2005.05.002","article-title":"T-Align, a web-based tool for comparison of multiple terminal restriction fragment length polymorphism profiles","volume":"54","author":"Smith","year":"2005","journal-title":"FEMS Microbiol. Ecol."}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/22\/14\/1788\/48839759\/bioinformatics_22_14_1788.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/22\/14\/1788\/48839759\/bioinformatics_22_14_1788.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,24]],"date-time":"2023-01-24T09:04:45Z","timestamp":1674551085000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/22\/14\/1788\/227671"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006,5,18]]},"references-count":6,"journal-issue":{"issue":"14","published-print":{"date-parts":[[2006,7,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btl186","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2006,7,15]]},"published":{"date-parts":[[2006,5,18]]}}}