{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,30]],"date-time":"2026-05-30T03:00:16Z","timestamp":1780110016613,"version":"3.54.0"},"reference-count":0,"publisher":"Oxford University Press (OUP)","issue":"14","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2006,7,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>The application of shotgun sequencing to environmental samples has revealed a new universe of microbial community genomes (metagenomes) involving previously uncultured organisms. Metagenome analysis, which is expected to provide a comprehensive picture of the gene functions and metabolic capacity for microbial communities, needs to be conducted in the context of a comprehensive data management and analysis system. We present in this paper IMG\/M, an experimental metagenome data management and analysis system that is based on the Integrated Microbial Genomes (IMG) system. IMG\/M provides tools and viewers for analyzing both metagenomes and isolate genomes individually or in a comparative context. IMG\/M is available at .<\/jats:p>\n               <jats:p>Contact: \u00a0vmmarkowitz@lbl.gov<\/jats:p>","DOI":"10.1093\/bioinformatics\/btl217","type":"journal-article","created":{"date-parts":[[2006,7,27]],"date-time":"2006-07-27T15:38:03Z","timestamp":1154014683000},"page":"e359-e367","source":"Crossref","is-referenced-by-count":64,"title":["An experimental metagenome data management and analysis system"],"prefix":"10.1093","volume":"22","author":[{"given":"Victor M.","family":"Markowitz","sequence":"first","affiliation":[{"name":"Biological Data Management and Technology Center, Lawrence Berkeley National Lab 1 \u00a0 1 \u00a0 \u00a0 USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Natalia","family":"Ivanova","sequence":"additional","affiliation":[{"name":"Genome Biology Program, Joint Genome Institute 2 \u00a0 2 \u00a0 \u00a0 USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Krishna","family":"Palaniappan","sequence":"additional","affiliation":[{"name":"Biological Data Management and Technology Center, Lawrence Berkeley National Lab 1 \u00a0 1 \u00a0 \u00a0 USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ernest","family":"Szeto","sequence":"additional","affiliation":[{"name":"Biological Data Management and Technology Center, Lawrence Berkeley National Lab 1 \u00a0 1 \u00a0 \u00a0 USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Frank","family":"Korzeniewski","sequence":"additional","affiliation":[{"name":"Biological Data Management and Technology Center, Lawrence Berkeley National Lab 1 \u00a0 1 \u00a0 \u00a0 USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Athanasios","family":"Lykidis","sequence":"additional","affiliation":[{"name":"Genome Biology Program, Joint Genome Institute 2 \u00a0 2 \u00a0 \u00a0 USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Iain","family":"Anderson","sequence":"additional","affiliation":[{"name":"Microbial Ecology Program, Joint Genome Institute 2 \u00a0 3 \u00a0 \u00a0 USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Konstantinos","family":"Mavrommatis","sequence":"additional","affiliation":[{"name":"Genome Biology Program, Joint Genome Institute 2 \u00a0 2 \u00a0 \u00a0 USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Victor","family":"Kunin","sequence":"additional","affiliation":[{"name":"Microbial Ecology Program, Joint Genome Institute 2 \u00a0 3 \u00a0 \u00a0 USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Hector","family":"Garcia Martin","sequence":"additional","affiliation":[{"name":"Microbial Ecology Program, Joint Genome Institute 2 \u00a0 3 \u00a0 \u00a0 USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Inna","family":"Dubchak","sequence":"additional","affiliation":[{"name":"Genome Biology Program, Joint Genome Institute 2 \u00a0 2 \u00a0 \u00a0 USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Phil","family":"Hugenholtz","sequence":"additional","affiliation":[{"name":"Microbial Ecology Program, Joint Genome Institute 2 \u00a0 3 \u00a0 \u00a0 USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Nikos C.","family":"Kyrpides","sequence":"additional","affiliation":[{"name":"Genome Biology Program, Joint Genome Institute 2 \u00a0 2 \u00a0 \u00a0 USA"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2006,7,15]]},"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/22\/14\/e359\/48841057\/bioinformatics_22_14_e359.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/22\/14\/e359\/48841057\/bioinformatics_22_14_e359.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,24]],"date-time":"2023-01-24T09:40:06Z","timestamp":1674553206000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/22\/14\/e359\/227980"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006,7,15]]},"references-count":0,"journal-issue":{"issue":"14","published-print":{"date-parts":[[2006,7,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btl217","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2006,7,15]]},"published":{"date-parts":[[2006,7,15]]}}}