{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,1,25]],"date-time":"2023-01-25T05:27:01Z","timestamp":1674624421254},"reference-count":9,"publisher":"Oxford University Press (OUP)","issue":"15","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2006,8,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: The characterization of deleterious genomic mutation (DGM) is of central significance for evolutionary biology and genetic studies. Fitness moment method has been developed to efficiently characterize DGM from natural population directly. In order to enable researchers to employ this method for theoretical and empirical research on characterizing DGM, we here present a distributed Java Application for DGM Estimation (JADE).<\/jats:p>\n               <jats:p>Availability: \u00a0<\/jats:p>\n               <jats:p>Contact: \u00a0Jinlong.Li@sbri.org<\/jats:p>","DOI":"10.1093\/bioinformatics\/btl278","type":"journal-article","created":{"date-parts":[[2006,6,10]],"date-time":"2006-06-10T00:49:11Z","timestamp":1149900551000},"page":"1926-1927","source":"Crossref","is-referenced-by-count":1,"title":["JADE: a distributed Java application for deleterious genomic mutation (DGM) estimation"],"prefix":"10.1093","volume":"22","author":[{"given":"J.-L.","family":"Li","sequence":"first","affiliation":[{"name":"Seattle Biomedical Research Institute, Seattle 1 \u00a0 1 \u00a0 \u00a0 WA 98109, USA"}]},{"given":"M.-X.","family":"Li","sequence":"additional","affiliation":[{"name":"Laboratory of Molecular and Statistical Genetics, College of Life Sciences, Hunan Normal University 2 \u00a0 2 \u00a0 \u00a0 Changsha 410081, People's Republic of China"},{"name":"Shanghai Center for Bioinformation Technology, Shanghai 200235 3 \u00a0 3 \u00a0 \u00a0 People's Republic of China"}]},{"given":"Y.-F.","family":"Guo","sequence":"additional","affiliation":[{"name":"Laboratory of Molecular and Statistical Genetics, College of Life Sciences, Hunan Normal University 2 \u00a0 2 \u00a0 \u00a0 Changsha 410081, People's Republic of China"}]},{"given":"H.-Y.","family":"Deng","sequence":"additional","affiliation":[{"name":"Departments of Orthopedic Surgery and Basic Medical Sciences, School of Medicine, University of Missouri-Kansas City 4 \u00a0 4 \u00a0 \u00a0 Kansas City, MO 64108, USA"}]},{"given":"H.-W.","family":"Deng","sequence":"additional","affiliation":[{"name":"Laboratory of Molecular and Statistical Genetics, College of Life Sciences, Hunan Normal University 2 \u00a0 2 \u00a0 \u00a0 Changsha 410081, People's Republic of China"},{"name":"Departments of Orthopedic Surgery and Basic Medical Sciences, School of Medicine, University of Missouri-Kansas City 4 \u00a0 4 \u00a0 \u00a0 Kansas City, MO 64108, USA"},{"name":"Osteoporosis Research Center, Creighton University Medical Center 5 \u00a0 5 \u00a0 \u00a0 Omaha, NE 68131, USA"}]}],"member":"286","published-online":{"date-parts":[[2006,6,9]]},"reference":[{"key":"2023012409111335200_b1","first-page":"170","article-title":"The viability of near-normal irradiated chromosomes","volume":"1","author":"Bateman","year":"1959","journal-title":"Int. J. Radiat. Biol."},{"key":"2023012409111335200_b2","doi-asserted-by":"crossref","first-page":"223","DOI":"10.1017\/S0016672398003255","article-title":"On the three methods for estimating deleterious genomic mutation parameters","volume":"71","author":"Deng","year":"1998","journal-title":"Genet. Res."},{"key":"2023012409111335200_b3","doi-asserted-by":"crossref","first-page":"147","DOI":"10.1017\/S0016672398003681","article-title":"On the experimental design and data analysis of mutation accumulation experiments","volume":"73","author":"Deng","year":"1999","journal-title":"Genet. Res."},{"key":"2023012409111335200_b4","doi-asserted-by":"crossref","first-page":"349","DOI":"10.1093\/genetics\/144.1.349","article-title":"Estimation of deleterious-mutation parameters in natural populations","volume":"144","author":"Deng","year":"1996","journal-title":"Genetics"},{"key":"2023012409111335200_b5","doi-asserted-by":"crossref","first-page":"2097","DOI":"10.1534\/genetics.105.044750","article-title":"The effect of antagonistic pleiotropy on the estimation of the average coefficient of dominance of deleterious mutations","volume":"171","author":"Fernandez","year":"2005","journal-title":"Genetics"},{"key":"2023012409111335200_b6","doi-asserted-by":"crossref","first-page":"1283","DOI":"10.1093\/genetics\/150.3.1283","article-title":"Inference of genome-wide mutation rates and distributions of mutation effects for fitness traits: a simulation study","volume":"150","author":"Keightley","year":"1998","journal-title":"Genetics"},{"key":"2023012409111335200_b7","doi-asserted-by":"crossref","first-page":"895","DOI":"10.1093\/genetics\/151.2.895","article-title":"The effect of overdominance on characterizing deleterious mutations in large natural populations","volume":"151","author":"Li","year":"1999","journal-title":"Genetics"},{"key":"2023012409111335200_b8","doi-asserted-by":"crossref","first-page":"855","DOI":"10.1073\/pnas.42.11.855","article-title":"An estimate of the mutational damage in man from data on consanguineous marriages","volume":"42","author":"Morton","year":"1956","journal-title":"Proc. Natl Acad. Sci. USA"},{"key":"2023012409111335200_b9","doi-asserted-by":"crossref","first-page":"135","DOI":"10.1038\/387135a0","article-title":"Evolutionary genetics. The muddle about mutations","volume":"387","author":"Peck","year":"1997","journal-title":"Nature"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/22\/15\/1926\/48840008\/bioinformatics_22_15_1926.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/22\/15\/1926\/48840008\/bioinformatics_22_15_1926.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,24]],"date-time":"2023-01-24T09:46:09Z","timestamp":1674553569000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/22\/15\/1926\/243283"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006,6,9]]},"references-count":9,"journal-issue":{"issue":"15","published-print":{"date-parts":[[2006,8,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btl278","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2006,8,1]]},"published":{"date-parts":[[2006,6,9]]}}}