{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,12]],"date-time":"2026-03-12T00:26:59Z","timestamp":1773275219482,"version":"3.50.1"},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"18","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2006,9,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: \u00a0OrderedList is a Bioconductor compliant package for meta-analysis based on ordered gene lists like those resulting from differential gene expression analysis. Our package quantifies the similarity between gene lists. The significance of the similarity score is estimated from random scores computed on perturbed data. OrderedList illustrates list similarity in intuitive plots and determines the score-driving genes for further analysis.<\/jats:p>\n               <jats:p>Availability: \u00a0<\/jats:p>\n               <jats:p>Contact: \u00a0claudio.lottaz@molgen.mpg.de<\/jats:p>\n               <jats:p>Supplementary information: Please visit our webpage on<\/jats:p>","DOI":"10.1093\/bioinformatics\/btl385","type":"journal-article","created":{"date-parts":[[2006,7,15]],"date-time":"2006-07-15T01:51:27Z","timestamp":1152928287000},"page":"2315-2316","source":"Crossref","is-referenced-by-count":58,"title":["<i>OrderedList<\/i>\u2014a bioconductor package for detecting similarity in ordered gene lists"],"prefix":"10.1093","volume":"22","author":[{"given":"Claudio","family":"Lottaz","sequence":"first","affiliation":[{"name":"Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics 1 \u00a0 1 \u00a0 \u00a0 Ihnestrasse 63-73, D-14195 Berlin, Germany"},{"name":"Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics 1 \u00a0 1 \u00a0 \u00a0 Ihnestrasse 63-73, D-14195 Berlin, Germany"}]},{"given":"Xinan","family":"Yang","sequence":"additional","affiliation":[{"name":"Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics 1 \u00a0 1 \u00a0 \u00a0 Ihnestrasse 63-73, D-14195 Berlin, Germany"},{"name":"State Key Laboratory of Bioelectronics, Southeast University 2 \u00a0 2 \u00a0 \u00a0 210096 Nanjing, People's Repuplic of China"},{"name":"Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics 1 \u00a0 1 \u00a0 \u00a0 Ihnestrasse 63-73, D-14195 Berlin, Germany"}]},{"given":"Stefanie","family":"Scheid","sequence":"additional","affiliation":[{"name":"Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics 1 \u00a0 1 \u00a0 \u00a0 Ihnestrasse 63-73, D-14195 Berlin, Germany"},{"name":"Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics 1 \u00a0 1 \u00a0 \u00a0 Ihnestrasse 63-73, D-14195 Berlin, Germany"}]},{"given":"Rainer","family":"Spang","sequence":"additional","affiliation":[{"name":"Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics 1 \u00a0 1 \u00a0 \u00a0 Ihnestrasse 63-73, D-14195 Berlin, Germany"}]}],"member":"286","published-online":{"date-parts":[[2006,7,14]]},"reference":[{"key":"2023012409215690200_b1","doi-asserted-by":"crossref","first-page":"R80","DOI":"10.1186\/gb-2004-5-10-r80","article-title":"Bioconductor: open software development for computational biology and bioinformatics","volume":"5","author":"Gentleman","year":"2004","journal-title":"Genome Biol."},{"key":"2023012409215690200_b2","doi-asserted-by":"crossref","first-page":"1590","DOI":"10.1016\/S0140-6736(03)13308-9","article-title":"Gene expression predictors of breast cancer outcomes","volume":"361","author":"Huang","year":"2003","journal-title":"Lancet"},{"key":"2023012409215690200_b3","doi-asserted-by":"crossref","first-page":"539","DOI":"10.1016\/S1525-5050(02)00558-9","article-title":"Now you see it, now you don't: statistical and methodological considerations in fMRI","volume":"3","author":"Loring","year":"2002","journal-title":"Epilepsy Behav."},{"key":"2023012409215690200_b4","article-title":"McKusick-Nathans Institute for Genetic Medicine, Johns Hopkins University (Baltimore, MD) and National Center for Biotechnology Information, National Library of Medicine (Bethesda, MD)","author":"Online Mendelian Inheritance in Man","year":"2000"},{"key":"2023012409215690200_b5","volume-title":"R: A Language and Environment for Statistical Computing","author":"R Development Core Team","year":"2004"},{"key":"2023012409215690200_b6","doi-asserted-by":"crossref","first-page":"203","DOI":"10.1016\/S1535-6108(02)00030-2","article-title":"Gene expression correlates of clinical prostate cancer behavior","volume":"1","author":"Singh","year":"2002","journal-title":"Cancer Cell"},{"key":"2023012409215690200_b7","doi-asserted-by":"crossref","DOI":"10.1142\/S0219720006002120","article-title":"Similarities of ordered gene lists","author":"Yang","year":"2006","journal-title":"J. Bioinf. Comp. Biol."}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/22\/18\/2315\/48841893\/bioinformatics_22_18_2315.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/22\/18\/2315\/48841893\/bioinformatics_22_18_2315.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,24]],"date-time":"2023-01-24T10:01:19Z","timestamp":1674554479000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/22\/18\/2315\/318038"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006,7,14]]},"references-count":7,"journal-issue":{"issue":"18","published-print":{"date-parts":[[2006,9,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btl385","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2006,9,15]]},"published":{"date-parts":[[2006,7,14]]}}}