{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,23]],"date-time":"2025-09-23T12:11:43Z","timestamp":1758629503972},"reference-count":8,"publisher":"Oxford University Press (OUP)","issue":"20","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2006,10,15]]},"abstract":"Abstract<\/jats:title>\n Summary: Sequence variants, in particular single nucleotide polymorphisms (SNPs), are key elements for the identification of genes associated with complex diseases and with particular drug responses. The search for literature about sequence variation is hampered by the large number of allelic variants reported for many genes and by the variability in both gene and sequence variants nomenclatures. We describe OSIRIS, a search tool that integrates different sources of information with the aim to retrieve literature about sequence variation of a gene. In addition, it provides a method to link a dbSNP entry with the articles referring to it.<\/jats:p>\n Availability: OSIRIS is available for public use at<\/jats:p>\n Contact: \u00a0fsanz@imim.es<\/jats:p>\n Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btl421","type":"journal-article","created":{"date-parts":[[2006,8,2]],"date-time":"2006-08-02T18:47:44Z","timestamp":1154544464000},"page":"2567-2569","source":"Crossref","is-referenced-by-count":15,"title":["OSIRIS: a tool for retrieving literature about sequence variants"],"prefix":"10.1093","volume":"22","author":[{"given":"Julio","family":"Bonis","sequence":"first","affiliation":[{"name":"Research Unit on Biomedical Informatics (GRIB), IMIM \u00a0 Universitat Pompeu Fabra, carrer Dr Aiguader 88, E-08003 Barcelona, Spain"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Laura In\u00e9s","family":"Furlong","sequence":"additional","affiliation":[{"name":"Research Unit on Biomedical Informatics (GRIB), IMIM \u00a0 Universitat Pompeu Fabra, carrer Dr Aiguader 88, E-08003 Barcelona, Spain"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ferran","family":"Sanz","sequence":"additional","affiliation":[{"name":"Research Unit on Biomedical Informatics (GRIB), IMIM \u00a0 Universitat Pompeu Fabra, carrer Dr Aiguader 88, E-08003 Barcelona, Spain"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2006,7,31]]},"reference":[{"key":"2023012409240220900_b1","doi-asserted-by":"crossref","first-page":"216","DOI":"10.1093\/bioinformatics\/btg393","article-title":"GAPSCORE: finding gene and protein names one word at a time","volume":"20","author":"Chang","year":"2004","journal-title":"Bioinformatics"},{"key":"2023012409240220900_b2","doi-asserted-by":"crossref","first-page":"S15","DOI":"10.1186\/1471-2105-6-S1-S15","article-title":"A simple approach for protein name identification: prospects and limits","volume":"6","author":"Fundel","year":"2005","journal-title":"BMC Bioinformatics"},{"key":"2023012409240220900_b3","doi-asserted-by":"crossref","first-page":"S14","DOI":"10.1186\/1471-2105-6-S1-S14","article-title":"ProMiner: rule-based protein and gene entity recognition","volume":"6","author":"Hanisch","year":"2005","journal-title":"BMC Bioinformatics"},{"key":"2023012409240220900_b4","doi-asserted-by":"crossref","first-page":"557","DOI":"10.1093\/bioinformatics\/btg449","article-title":"Automated extraction of mutation data from the literature: application of MuteXt to G protein-coupled receptors and nuclear hormone receptors","volume":"20","author":"Horn","year":"2004","journal-title":"Bioinformatics"},{"key":"2023012409240220900_b5","doi-asserted-by":"crossref","first-page":"119","DOI":"10.1038\/nrg1768","article-title":"Literature mining for the biologist: from information retrieval to biological discovery","volume":"7","author":"Jensen","year":"2006","journal-title":"Nat. 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Genet."},{"key":"2023012409240220900_b6","doi-asserted-by":"crossref","first-page":"35","DOI":"10.1002\/3527600752.ch3","article-title":"Turning SNPs into Useful Markers of Drug Response","volume-title":"Pharmacogenomics: The Search for Individualized Therapies","author":"McCarthy","year":"2002"},{"key":"2023012409240220900_b7","doi-asserted-by":"crossref","first-page":"135","DOI":"10.1093\/nar\/gkh162","article-title":"Automatic extraction of mutations from Medline and cross-validation with OMIM","volume":"32","author":"Rebholz-Schuhmann","year":"2004","journal-title":"Nucleic Acids Res."},{"key":"2023012409240220900_b8","doi-asserted-by":"crossref","first-page":"677","DOI":"10.1101\/gr.9.8.677","article-title":"dbSNP-database for single nucleotide polymorphisms and other classes of minor genetic variation","volume":"9","author":"Sherry","year":"1999","journal-title":"Genome Res."}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/22\/20\/2567\/48841478\/bioinformatics_22_20_2567.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/22\/20\/2567\/48841478\/bioinformatics_22_20_2567.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,24]],"date-time":"2023-01-24T09:27:40Z","timestamp":1674552460000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/22\/20\/2567\/218465"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006,7,31]]},"references-count":8,"journal-issue":{"issue":"20","published-print":{"date-parts":[[2006,10,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btl421","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2006,10,15]]},"published":{"date-parts":[[2006,7,31]]}}}