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The alternatively aligned regions from the input alignment set are combined according to their fit in the structural environment of the template structure. The resulting, optimally spliced MMM alignment is used as input to an automated comparative modeling module to produce a full atom model.<\/jats:p>\n               <jats:p>Availability: The MMM server is freely accessible at<\/jats:p>\n               <jats:p>Contact: \u00a0andras@fiserlab.org<\/jats:p>","DOI":"10.1093\/bioinformatics\/btl449","type":"journal-article","created":{"date-parts":[[2006,8,24]],"date-time":"2006-08-24T00:25:54Z","timestamp":1156379154000},"page":"2691-2692","source":"Crossref","is-referenced-by-count":30,"title":["MMM: a sequence-to-structure alignment protocol"],"prefix":"10.1093","volume":"22","author":[{"given":"Brajesh K.","family":"Rai","sequence":"first","affiliation":[{"name":"Department of Biochemistry and Seaver Center for Bioinformatics, Albert Einstein College of Medicine \u00a0 1300 Morris Park Avenue, Bronx, NY 10461, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Carlos J.","family":"Madrid-Aliste","sequence":"additional","affiliation":[{"name":"Department of Biochemistry and Seaver Center for Bioinformatics, Albert Einstein College of Medicine \u00a0 1300 Morris Park Avenue, Bronx, NY 10461, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"J. Eduardo","family":"Fajardo","sequence":"additional","affiliation":[{"name":"Department of Biochemistry and Seaver Center for Bioinformatics, Albert Einstein College of Medicine \u00a0 1300 Morris Park Avenue, Bronx, NY 10461, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Andr\u00e1s","family":"Fiser","sequence":"additional","affiliation":[{"name":"Department of Biochemistry and Seaver Center for Bioinformatics, Albert Einstein College of Medicine \u00a0 1300 Morris Park Avenue, Bronx, NY 10461, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2006,8,23]]},"reference":[{"key":"2023012408421658500_b1","doi-asserted-by":"crossref","first-page":"365","DOI":"10.1093\/nar\/gkg095","article-title":"The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003","volume":"31","author":"Boeckmann","year":"2003","journal-title":"Nucleic Acids Res."},{"key":"2023012408421658500_b2","doi-asserted-by":"crossref","first-page":"113","DOI":"10.1186\/1471-2105-5-113","article-title":"MUSCLE: a multiple sequence alignment method with reduced time and space complexity","volume":"5","author":"Edgar","year":"2004","journal-title":"BMC Bioinformatics"},{"key":"2023012408421658500_b3","doi-asserted-by":"crossref","first-page":"97","DOI":"10.1586\/14789450.1.1.97","article-title":"Protein structure modeling in the proteomics era","volume":"1","author":"Fiser","year":"2004","journal-title":"Exp. 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