{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,20]],"date-time":"2025-10-20T17:36:45Z","timestamp":1760981805766},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"2","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2007,1,15]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>Summary: We introduce a simple-to-use graphical tool that enables researchers to easily prepare time-of-flight mass spectrometry data for analysis. For ease of use, the graphical executable provides default parameter settings, experimentally determined to work well in most situations. These values, if desired, can be changed by the user. PrepMS is a stand-alone application made freely available (open source), and is under the General Public License (GPL). Its graphical user interface, default parameter settings, and display plots allow PrepMS to be used effectively for data preprocessing, peak detection and visual data quality assessment.<\/jats:p><jats:p>Availability: Stand-alone executable files and Matlab toolbox are available for download at:<\/jats:p><jats:p>Contact: \u00a0ykarpi@mdanderson.org<\/jats:p><jats:p>Supplementary information: Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btl583","type":"journal-article","created":{"date-parts":[[2006,11,23]],"date-time":"2006-11-23T01:24:28Z","timestamp":1164245068000},"page":"264-265","source":"Crossref","is-referenced-by-count":36,"title":["PrepMS: TOF MS data graphical preprocessing tool"],"prefix":"10.1093","volume":"23","author":[{"given":"Yuliya V.","family":"Karpievitch","sequence":"first","affiliation":[{"name":"Department of Biostatistics, Bioinformatics and Epidemiology, Medical University of South Carolina, Charleston 1 \u00a0 1 \u00a0 \u00a0 SC 29425, USA"},{"name":"Department of Biostatistics and Applied Mathematics, M. D. Anderson Cancer Center, University of Texas, Houston 3 \u00a0 3 \u00a0 \u00a0 TX 77030, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Elizabeth G.","family":"Hill","sequence":"additional","affiliation":[{"name":"Department of Biostatistics, Bioinformatics and Epidemiology, Medical University of South Carolina, Charleston 1 \u00a0 1 \u00a0 \u00a0 SC 29425, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Adam J.","family":"Smolka","sequence":"additional","affiliation":[{"name":"Department of Medicine, Medical University of South Carolina, Charleston 2 \u00a0 2 \u00a0 \u00a0 SC 29425, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jeffrey S.","family":"Morris","sequence":"additional","affiliation":[{"name":"Department of Biostatistics and Applied Mathematics, M. D. Anderson Cancer Center, University of Texas, Houston 3 \u00a0 3 \u00a0 \u00a0 TX 77030, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Kevin R.","family":"Coombes","sequence":"additional","affiliation":[{"name":"Department of Biostatistics and Applied Mathematics, M. D. Anderson Cancer Center, University of Texas, Houston 3 \u00a0 3 \u00a0 \u00a0 TX 77030, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Keith A.","family":"Baggerly","sequence":"additional","affiliation":[{"name":"Department of Biostatistics and Applied Mathematics, M. D. Anderson Cancer Center, University of Texas, Houston 3 \u00a0 3 \u00a0 \u00a0 TX 77030, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jonas S.","family":"Almeida","sequence":"additional","affiliation":[{"name":"Department of Biostatistics and Applied Mathematics, M. D. 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