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Our plug-in, named GOlorize, first highlights the class members with category-specific color-coding and then constructs an enhanced visualization of the network using a class-directed layout algorithm<\/jats:p><jats:p>Availability:<\/jats:p><jats:p>Contact: \u00a0teanai@pasteur.fr<\/jats:p><jats:p>Supplementary information: Installation instructions and tutorial at<\/jats:p>","DOI":"10.1093\/bioinformatics\/btl605","type":"journal-article","created":{"date-parts":[[2006,11,25]],"date-time":"2006-11-25T01:13:11Z","timestamp":1164417191000},"page":"394-396","source":"Crossref","is-referenced-by-count":90,"title":["GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring"],"prefix":"10.1093","volume":"23","author":[{"given":"Olivier","family":"Garcia","sequence":"first","affiliation":[{"name":"Systems Biology Unit, Institut Pasteur 1 \u00a0 1 \u00a0 \u00a0 75724 Paris Cedex 15, France"}]},{"given":"Cosmin","family":"Saveanu","sequence":"additional","affiliation":[{"name":"Macromolecular Interaction Genetics, Institut Pasteur 2 \u00a0 2 \u00a0 \u00a0 75724 Paris Cedex 15, France"}]},{"given":"Melissa","family":"Cline","sequence":"additional","affiliation":[{"name":"Systems Biology Unit, Institut Pasteur 1 \u00a0 1 \u00a0 \u00a0 75724 Paris Cedex 15, France"}]},{"given":"Micheline","family":"Fromont-Racine","sequence":"additional","affiliation":[{"name":"Macromolecular Interaction Genetics, Institut Pasteur 2 \u00a0 2 \u00a0 \u00a0 75724 Paris Cedex 15, France"}]},{"given":"Alain","family":"Jacquier","sequence":"additional","affiliation":[{"name":"Macromolecular Interaction Genetics, Institut Pasteur 2 \u00a0 2 \u00a0 \u00a0 75724 Paris Cedex 15, France"}]},{"given":"Benno","family":"Schwikowski","sequence":"additional","affiliation":[{"name":"Systems Biology Unit, Institut Pasteur 1 \u00a0 1 \u00a0 \u00a0 75724 Paris Cedex 15, France"}]},{"given":"Tero","family":"Aittokallio","sequence":"additional","affiliation":[{"name":"Systems Biology Unit, Institut Pasteur 1 \u00a0 1 \u00a0 \u00a0 75724 Paris Cedex 15, France"}]}],"member":"286","published-online":{"date-parts":[[2006,11,24]]},"reference":[{"key":"2023041108364617200_","doi-asserted-by":"crossref","first-page":"1129","DOI":"10.1002\/spe.4380211102","article-title":"Graph drawing by force-directed placement","volume":"21","author":"Fruchterman","year":"1991","journal-title":"Software\u2014Practice and Experience"},{"key":"2023041108364617200_","doi-asserted-by":"crossref","first-page":"D436","DOI":"10.1093\/nar\/gkj003","article-title":"MPact: the MIPS protein interaction resource on yeast","volume":"34","author":"Guldener","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"2023041108364617200_","doi-asserted-by":"crossref","first-page":"3448","DOI":"10.1093\/bioinformatics\/bti551","article-title":"BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in biological networks","volume":"21","author":"Maere","year":"2005","journal-title":"Bioinformatics"},{"key":"2023041108364617200_","doi-asserted-by":"crossref","first-page":"2498","DOI":"10.1101\/gr.1239303","article-title":"Cytoscape: a software environment for integrated models of biomolecular interaction networks","volume":"13","author":"Shannon","year":"2003","journal-title":"Genome Res."},{"key":"2023041108364617200_","doi-asserted-by":"crossref","first-page":"D535","DOI":"10.1093\/nar\/gkj109","article-title":"BioGRID: a general repository for interaction datasets","volume":"34","author":"Stark","year":"2006","journal-title":"Nucleic Acids Res."}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/23\/3\/394\/49829417\/bioinformatics_23_3_394.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/23\/3\/394\/49829417\/bioinformatics_23_3_394.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,5,9]],"date-time":"2023-05-09T20:45:53Z","timestamp":1683665153000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/23\/3\/394\/236164"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2006,11,24]]},"references-count":5,"journal-issue":{"issue":"3","published-print":{"date-parts":[[2007,2,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btl605","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2007,2,1]]},"published":{"date-parts":[[2006,11,24]]}}}