{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,2,11]],"date-time":"2024-02-11T00:03:16Z","timestamp":1707609796326},"reference-count":14,"publisher":"Oxford University Press (OUP)","issue":"7","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2007,4,1]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>Summary: A critical step in any SAGE, MPSS and SBS data analysis is tag-to-gene assignment. Current available tools are limited by a tag-by-tag annotation process and\/or do not provide the dataset that is used to produce a complete tag-to-gene mapping. We developed ACTG, a web-based application that allows a large-scale tag-to-gene mapping using several reference datasets. ACTG can annotate SAGE (14 or 21\u2009bp), MPSS (17 or 20\u2009bp) and SBS (16\u2009bp) data for both human and mouse organisms.<\/jats:p><jats:p>Availability: \u00a0http:\/\/retina.med.harvard.edu\/ACTG\/<\/jats:p><jats:p>Contact: \u00a0pgalante@ludwig.org.br<\/jats:p><jats:p>Supplementary information: Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btm023","type":"journal-article","created":{"date-parts":[[2007,2,4]],"date-time":"2007-02-04T12:39:26Z","timestamp":1170592766000},"page":"903-905","source":"Crossref","is-referenced-by-count":6,"title":["Automatic correspondence of tags and genes (ACTG): a tool for the analysis of SAGE, MPSS and SBS data"],"prefix":"10.1093","volume":"23","author":[{"given":"Pedro A. F.","family":"Galante","sequence":"first","affiliation":[{"name":"1 Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, 2Laboratory of Computational Biology, Ludwig Institute for Cancer Research, S\u00e3o Paulo Branch, Brazil, 3Department of Genetics, Harvard Medical School, 4Howard Hughes Medical Institute, Harvard Medical School, 5Decision Systems Group, Brigham and Women's Hospital, 6Division of Health Sciences and Technology, Harvard Medical School and MIT, Boston, 7Department of Organismic and Evolutionary Biology\/FAS, Harvard University, and 8Department of Developmental Biology, Harvard School of Dental Medicine, Harvard University, Cambridge, MA, USA"},{"name":"1 Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, 2Laboratory of Computational Biology, Ludwig Institute for Cancer Research, S\u00e3o Paulo Branch, Brazil, 3Department of Genetics, Harvard Medical School, 4Howard Hughes Medical Institute, Harvard Medical School, 5Decision Systems Group, Brigham and Women's Hospital, 6Division of Health Sciences and Technology, Harvard Medical School and MIT, Boston, 7Department of Organismic and Evolutionary Biology\/FAS, Harvard University, and 8Department of Developmental Biology, Harvard School of Dental Medicine, Harvard University, Cambridge, MA, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jeff","family":"Trimarchi","sequence":"additional","affiliation":[{"name":"1 Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, 2Laboratory of Computational Biology, Ludwig Institute for Cancer Research, S\u00e3o Paulo Branch, Brazil, 3Department of Genetics, Harvard Medical School, 4Howard Hughes Medical Institute, Harvard Medical School, 5Decision Systems Group, Brigham and Women's Hospital, 6Division of Health Sciences and Technology, Harvard Medical School and MIT, Boston, 7Department of Organismic and Evolutionary Biology\/FAS, Harvard University, and 8Department of Developmental Biology, Harvard School of Dental Medicine, Harvard University, Cambridge, MA, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Constance L.","family":"Cepko","sequence":"additional","affiliation":[{"name":"1 Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, 2Laboratory of Computational Biology, Ludwig Institute for Cancer Research, S\u00e3o Paulo Branch, Brazil, 3Department of Genetics, Harvard Medical School, 4Howard Hughes Medical Institute, Harvard Medical School, 5Decision Systems Group, Brigham and Women's Hospital, 6Division of Health Sciences and Technology, Harvard Medical School and MIT, Boston, 7Department of Organismic and Evolutionary Biology\/FAS, Harvard University, and 8Department of Developmental Biology, Harvard School of Dental Medicine, Harvard University, Cambridge, MA, USA"},{"name":"1 Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, 2Laboratory of Computational Biology, Ludwig Institute for Cancer Research, S\u00e3o Paulo Branch, Brazil, 3Department of Genetics, Harvard Medical School, 4Howard Hughes Medical Institute, Harvard Medical School, 5Decision Systems Group, Brigham and Women's Hospital, 6Division of Health Sciences and Technology, Harvard Medical School and MIT, Boston, 7Department of Organismic and Evolutionary Biology\/FAS, Harvard University, and 8Department of Developmental Biology, Harvard School of Dental Medicine, Harvard University, Cambridge, MA, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sandro J.","family":"de Souza","sequence":"additional","affiliation":[{"name":"1 Departamento de Bioqu\u00edmica, Instituto de Qu\u00edmica, Universidade de S\u00e3o Paulo, S\u00e3o Paulo, 2Laboratory of Computational Biology, Ludwig Institute for Cancer 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