{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,5]],"date-time":"2025-11-05T20:39:01Z","timestamp":1762375141518},"reference-count":12,"publisher":"Oxford University Press (OUP)","issue":"7","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2007,4,1]]},"abstract":"Abstract<\/jats:title>Summary: We have developed the software CopyCat which provides an easy and fast access to cophylogenetic analyses. It incorporates a wrapper for the program ParaFit, which conducts a statistical test for the presence of congruence between host and parasite phylogenies. CopyCat offers various features, such as the creation of customized host\u2013parasite association data and the computation of phylogenetic host\/parasite trees based on the NCBI taxonomy.<\/jats:p>Availability: CopyCat and its manual are freely available at http:\/\/www-ab.informatik.uni-tuebingen.de\/software\/copycat.<\/jats:p>Contact: \u00a0auch@informatik.uni-tuebingen.de<\/jats:p>Supplementary information: Results of the real-world example can be found at http:\/\/www-ab.informatik.uni-tuebingen.de\/software\/copycat or Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btm027","type":"journal-article","created":{"date-parts":[[2007,2,3]],"date-time":"2007-02-03T01:16:30Z","timestamp":1170465390000},"page":"898-900","source":"Crossref","is-referenced-by-count":87,"title":["Copy<\/scp>Cat<\/scp>\u2009: cophylogenetic analysis tool"],"prefix":"10.1093","volume":"23","author":[{"given":"Jan P.","family":"Meier-Kolthoff","sequence":"first","affiliation":[{"name":"1 Center for Bioinformatics (ZBIT), Sand 14, T\u00fcbingen and 2Organismic Botany\/Mycology, Auf der Morgenstelle 1, T\u00fcbingen, University of T\u00fcbingen, Germany"}]},{"given":"Alexander F.","family":"Auch","sequence":"additional","affiliation":[{"name":"1 Center for Bioinformatics (ZBIT), Sand 14, T\u00fcbingen and 2Organismic Botany\/Mycology, Auf der Morgenstelle 1, T\u00fcbingen, University of T\u00fcbingen, Germany"}]},{"given":"Daniel H.","family":"Huson","sequence":"additional","affiliation":[{"name":"1 Center for Bioinformatics (ZBIT), Sand 14, T\u00fcbingen and 2Organismic Botany\/Mycology, Auf der Morgenstelle 1, T\u00fcbingen, University of T\u00fcbingen, Germany"}]},{"given":"Markus","family":"G\u00f6ker","sequence":"additional","affiliation":[{"name":"1 Center for Bioinformatics (ZBIT), Sand 14, T\u00fcbingen and 2Organismic Botany\/Mycology, Auf der Morgenstelle 1, T\u00fcbingen, University of T\u00fcbingen, Germany"}]}],"member":"286","published-online":{"date-parts":[[2007,1,31]]},"reference":[{"key":"2023041108144522100_","first-page":"57","article-title":"Ustilaginomycetes","volume-title":"The Mycota VII, Systematics and Evolution, Part B.","author":"Bauer","year":"2001"},{"key":"2023041108144522100_","first-page":"81","article-title":"About the evolution of smut fungi on their hosts","volume-title":"Frontiers in Basidiomycete Mycology.","author":"Begerow","year":"2004"},{"key":"2023041108144522100_","first-page":"10","volume-title":"Program distpcoa.","author":"Legendre","year":"1998"},{"key":"2023041108144522100_","doi-asserted-by":"crossref","first-page":"217","DOI":"10.1080\/10635150252899734","article-title":"A statistical test for host-parasite coevolution","volume":"51","author":"Legendre","year":"2002","journal-title":"Systematic Biology"},{"key":"2023041108144522100_","first-page":"244","volume-title":"Numerical Ecology.","author":"Legendre","year":"1998","edition":"2nd edn"},{"key":"2023041108144522100_","unstructured":"NCBI Taxonomy database 2006 ftp:\/\/ftp.ncbi.nih.gov\/pub\/taxonomy"},{"key":"2023041108144522100_","first-page":"1","article-title":"Tangled Trees. 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