{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,2,12]],"date-time":"2024-02-12T10:40:25Z","timestamp":1707734425718},"reference-count":9,"publisher":"Oxford University Press (OUP)","issue":"9","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2007,5,1]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>Summary: Several semantic Web Services clients for Bioinformatics have been released, but to date no support systems for service providers have been described. We have created a framework (\u2018MobyServlet\u2019) that very simply allows an existing Java application to conform to the MOBY-S semantic Web Services protocol. Using an existing Java program for codon-pair bias determination as an example, we enumerate the steps required for MOBY-S compliance. With minimal programming effort, such a deployment has the advantages of: (1) wider exposure to the user community by automatic inclusion in all MOBY-S client programs and (2) automatic interoperability with other MOBY-S services for input and output. Complex on-line analysis will become easier for biologists as more developers adopt MOBY-S.<\/jats:p><jats:p>Availability: The framework and documentation are freely available from the Java developer's section of http:\/\/www.biomoby.org\/.<\/jats:p><jats:p>Contact: \u00a0gordonp@ucalgary.ca<\/jats:p>","DOI":"10.1093\/bioinformatics\/btm060","type":"journal-article","created":{"date-parts":[[2007,3,24]],"date-time":"2007-03-24T23:57:42Z","timestamp":1174780662000},"page":"1178-1180","source":"Crossref","is-referenced-by-count":8,"title":["Semantic Web Service provision: a realistic framework for Bioinformatics programmers"],"prefix":"10.1093","volume":"23","author":[{"given":"Paul M.K.","family":"Gordon","sequence":"first","affiliation":[{"name":"University of Calgary, Faculty of Medicine, Sun Center of Excellence for Visual Genomics 3330 Hospital Drive NW, Calgary, AB, Canada, T2N 4N1"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Quang","family":"Trinh","sequence":"additional","affiliation":[{"name":"University of Calgary, Faculty of Medicine, Sun Center of Excellence for Visual Genomics 3330 Hospital Drive NW, Calgary, AB, Canada, T2N 4N1"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Christoph W.","family":"Sensen","sequence":"additional","affiliation":[{"name":"University of Calgary, Faculty of Medicine, Sun Center of Excellence for Visual Genomics 3330 Hospital Drive NW, Calgary, AB, Canada, T2N 4N1"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2007,3,24]]},"reference":[{"key":"2023041209112399600_","doi-asserted-by":"crossref","first-page":"900","DOI":"10.1093\/bioinformatics\/btl001","article-title":"Remora: a pilot in the ocean of biomoby web-services","volume":"22","author":"Carrere","year":"2006","journal-title":"Bioinformatics"},{"key":"2023041209112399600_","doi-asserted-by":"crossref","first-page":"22801","DOI":"10.1074\/jbc.270.39.22801","article-title":"Codon pair utilization biases influence translational elongation step times","volume":"270","author":"Irwin","year":"1995","journal-title":"J. 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