{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,31]],"date-time":"2025-10-31T07:08:21Z","timestamp":1761894501423},"reference-count":3,"publisher":"Oxford University Press (OUP)","issue":"11","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2007,6,1]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>Summary: Web content syndication through standard formats such as RSS and ATOM has become an increasingly popular mechanism for publishers, news sources and blogs to disseminate regularly updated content. These standardized syndication formats deliver content directly to the subscriber, allowing them to locally aggregate content from a variety of sources instead of having to find the information on multiple websites. The uBioRSS application is a \u2018taxonomically intelligent\u2019 service customized for the biological sciences. It aggregates syndicated content from academic publishers and science news feeds, and then uses a taxonomic Named Entity Recognition algorithm to identify and index taxonomic names within those data streams. The resulting name index is cross-referenced to current global taxonomic datasets to provide context for browsing the publications by taxonomic group. This process, called taxonomic indexing, draws upon services developed specifically for biological sciences, collectively referred to as \u2018taxonomic intelligence\u2019. Such value-added enhancements can provide biologists with accelerated and improved access to current biological content.<\/jats:p><jats:p>Availability: \u00a0http:\/\/names.ubio.org\/rss\/<\/jats:p><jats:p>Contact: sarkar@mbl.edu<\/jats:p><jats:p>Supplementary information: Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btm109","type":"journal-article","created":{"date-parts":[[2007,3,29]],"date-time":"2007-03-29T00:32:41Z","timestamp":1175128361000},"page":"1434-1436","source":"Crossref","is-referenced-by-count":23,"title":["uBioRSS: Tracking taxonomic literature using RSS"],"prefix":"10.1093","volume":"23","author":[{"given":"Patrick R.","family":"Leary","sequence":"first","affiliation":[{"name":"1 MBL Informatics, Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543, USA and 2Global Biodiversity Information Facility Secretariat, Universitetsparken 15, DK-2100 Copenhagen, Denmark"}]},{"given":"David P.","family":"Remsen","sequence":"additional","affiliation":[{"name":"1 MBL Informatics, Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543, USA and 2Global Biodiversity Information Facility Secretariat, Universitetsparken 15, DK-2100 Copenhagen, Denmark"}]},{"given":"Catherine N.","family":"Norton","sequence":"additional","affiliation":[{"name":"1 MBL Informatics, Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543, USA and 2Global Biodiversity Information Facility Secretariat, Universitetsparken 15, DK-2100 Copenhagen, Denmark"}]},{"given":"David J.","family":"Patterson","sequence":"additional","affiliation":[{"name":"1 MBL Informatics, Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543, USA and 2Global Biodiversity Information Facility Secretariat, Universitetsparken 15, DK-2100 Copenhagen, Denmark"}]},{"given":"Indra Neil","family":"Sarkar","sequence":"additional","affiliation":[{"name":"1 MBL Informatics, Marine Biological Laboratory, 7 MBL Street, Woods Hole, MA 02543, USA and 2Global Biodiversity Information Facility Secretariat, Universitetsparken 15, DK-2100 Copenhagen, Denmark"}]}],"member":"286","published-online":{"date-parts":[[2007,3,28]]},"reference":[{"key":"2023041104583175500_","first-page":"79","article-title":"TaxonGrab: extracting taxonomic names from text","volume":"2","author":"Konig","year":"2005","journal-title":"Biodiversity Informatics"},{"key":"2023041104583175500_","unstructured":"Page RDM SemAnt: automatically growing an ant bibliography 2006 http:\/\/semant.blogspot.com\/2006\/10\/automatically-growing-ant-bibliography.html"},{"key":"2023041104583175500_","doi-asserted-by":"crossref","first-page":"367","DOI":"10.1080\/10635150500541680","article-title":"Taxonomic indexing \u2013 extending the role of taxonomy","volume":"55","author":"Patterson","year":"2006","journal-title":"Syst. Biol."}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/23\/11\/1434\/49812367\/bioinformatics_23_11_1434.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/23\/11\/1434\/49812367\/bioinformatics_23_11_1434.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,5,11]],"date-time":"2023-05-11T05:54:26Z","timestamp":1683784466000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/23\/11\/1434\/201163"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2007,3,28]]},"references-count":3,"journal-issue":{"issue":"11","published-print":{"date-parts":[[2007,6,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btm109","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2007,6]]},"published":{"date-parts":[[2007,3,28]]}}}