{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,6,3]],"date-time":"2026-06-03T00:05:59Z","timestamp":1780445159692,"version":"3.54.1"},"reference-count":5,"publisher":"Oxford University Press (OUP)","issue":"14","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2007,7,15]]},"abstract":"<jats:title>Abstract<\/jats:title><jats:p>The Open Biomedical Ontologies (OBO) format from the GO consortium is a very successful format for biomedical ontologies, including the Gene Ontology. But it lacks formal computational definitions for its constructs and tools, like DL reasoners, to facilitate ontology development\/maintenance. We describe the OBO Converter, a Java tool to convert files from OBO format to Web Ontology Language (OWL) (and vice versa) that can also be used as a Prot\u00e9g\u00e9 Tab plug-in. It uses the OBO to OWL mapping provided by the National Center for Biomedical Ontologies (NCBO) (a joint effort of OBO developers and OWL experts) and offers options to ease the task of saving\/reading files in both formats.<\/jats:p><jats:p>Availability: bioontology.org\/tools\/oboinowl\/obo_converter.html<\/jats:p><jats:p>Contact: \u00a0dilvan@stanford.edu<\/jats:p><jats:p>Supplementary information: Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btm258","type":"journal-article","created":{"date-parts":[[2007,5,13]],"date-time":"2007-05-13T00:28:37Z","timestamp":1179016117000},"page":"1868-1870","source":"Crossref","is-referenced-by-count":35,"title":["OBO to OWL: a prot\u00e9g\u00e9 OWL tab to read\/save OBO ontologies"],"prefix":"10.1093","volume":"23","author":[{"given":"Dilvan A.","family":"Moreira","sequence":"first","affiliation":[{"name":"1 Stanford Medical Informatics, Stanford University School of Medicine, Stanford, CA 94002, USA and 2USP, S\u00e3o Paulo, Brazil"},{"name":"1 Stanford Medical Informatics, Stanford University School of Medicine, Stanford, CA 94002, USA and 2USP, S\u00e3o Paulo, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Mark A.","family":"Musen","sequence":"additional","affiliation":[{"name":"1 Stanford Medical Informatics, Stanford University School of Medicine, Stanford, CA 94002, USA and 2USP, S\u00e3o Paulo, Brazil"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2007,5,12]]},"reference":[{"key":"2023041105222765800_","doi-asserted-by":"crossref","first-page":"825","DOI":"10.1093\/bioinformatics\/bti097","article-title":"COBrA: a bio-ontology editor","volume":"21","author":"Aitken","year":"2004","journal-title":"Bioinformatics"},{"key":"2023041105222765800_","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1038\/75556","article-title":"Gene Ontology: tool for the unification of biology","volume":"25","author":"Ashburner","year":"2000","journal-title":"Nat. Genet."},{"key":"2023041105222765800_","unstructured":"GO The OBO Flat File Format Specification 2004 Version 1.2 http:\/\/www.geneontology.org\/GO.format.obo-1_2.shtml"},{"key":"2023041105222765800_","doi-asserted-by":"crossref","first-page":"509","DOI":"10.1002\/cfg.435","article-title":"Obol: integrating language and meaning in bio-ontologies","volume":"5","author":"Mungall","year":"2004","journal-title":"Comp. Funct. Genom."},{"key":"2023041105222765800_","unstructured":"NCBO OBO in OWL: Mapping and Tools 2007 February 12 http:\/\/www.bioontology.org\/wiki\/index.php?title=OboInOwl:Main_Page"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/23\/14\/1868\/49812820\/bioinformatics_23_14_1868.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/23\/14\/1868\/49812820\/bioinformatics_23_14_1868.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,2,14]],"date-time":"2024-02-14T06:53:38Z","timestamp":1707893618000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/23\/14\/1868\/190547"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2007,5,12]]},"references-count":5,"journal-issue":{"issue":"14","published-print":{"date-parts":[[2007,7,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btm258","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2007,7,15]]},"published":{"date-parts":[[2007,5,12]]}}}