{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,5,14]],"date-time":"2025-05-14T01:10:59Z","timestamp":1747185059973,"version":"3.30.2"},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"16","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2007,8,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: The Alvira tool is a general purpose multiple sequence alignment viewer with a special emphasis on the comparative analysis of viral genomes. This new tool has been devised specifically to address the problem of the simultaneous analysis of a large number of viral strains. The multiple alignment is embedded in a graph that can be explored at different levels of resolution.<\/jats:p>\n               <jats:p>Availability: The Alvira software is available at: http:\/\/bioinfo.genopole-toulouse.prd.fr\/Alvira<\/jats:p>\n               <jats:p>Contact: \u00a0fenault@toulouse.inra.fr<\/jats:p>\n               <jats:p>Supplementary information: A tutorial is available at Alvira's homepage.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btm293","type":"journal-article","created":{"date-parts":[[2007,6,6]],"date-time":"2007-06-06T01:48:58Z","timestamp":1181094538000},"page":"2178-2179","source":"Crossref","is-referenced-by-count":6,"title":["Alvira: comparative genomics of viral strains"],"prefix":"10.1093","volume":"23","author":[{"given":"Fran\u00e7ois","family":"Enault","sequence":"first","affiliation":[{"name":"1 Laboratoire de G\u00e9n\u00e9tique Cellulaire INRA UMR444, Chemin de Borde Rouge BP52627 31326 Castanet Tolosan Cedex and 2Laboratoire des Interactions Hotes-Agents Pathog\u00e8nes ENVT UMR1225, 23 chemin des Capelles 31000 Toulouse, France"}]},{"given":"Romain","family":"Fremez","sequence":"additional","affiliation":[{"name":"1 Laboratoire de G\u00e9n\u00e9tique Cellulaire INRA UMR444, Chemin de Borde Rouge BP52627 31326 Castanet Tolosan Cedex and 2Laboratoire des Interactions Hotes-Agents Pathog\u00e8nes ENVT UMR1225, 23 chemin des Capelles 31000 Toulouse, France"}]},{"given":"Eric","family":"Baranowski","sequence":"additional","affiliation":[{"name":"1 Laboratoire de G\u00e9n\u00e9tique Cellulaire INRA UMR444, Chemin de Borde Rouge BP52627 31326 Castanet Tolosan Cedex and 2Laboratoire des Interactions Hotes-Agents Pathog\u00e8nes ENVT UMR1225, 23 chemin des Capelles 31000 Toulouse, France"}]},{"given":"Thomas","family":"Faraut","sequence":"additional","affiliation":[{"name":"1 Laboratoire de G\u00e9n\u00e9tique Cellulaire INRA UMR444, Chemin de Borde Rouge BP52627 31326 Castanet Tolosan Cedex and 2Laboratoire des Interactions Hotes-Agents Pathog\u00e8nes ENVT UMR1225, 23 chemin des Capelles 31000 Toulouse, France"}]}],"member":"286","published-online":{"date-parts":[[2007,6,5]]},"reference":[{"key":"2024121118013891500_B1","doi-asserted-by":"crossref","first-page":"96","DOI":"10.1186\/1471-2105-5-96","article-title":"Base-By-Base: single nucleotide-level analysis of whole viral genome alignments","volume":"5","author":"Brodie","year":"2004","journal-title":"BMC Bioinformatics"},{"key":"2024121118013891500_B2","doi-asserted-by":"crossref","first-page":"3497","DOI":"10.1093\/nar\/gkg500","article-title":"Multiple sequence alignment with the Clustal series of programs","volume":"31","author":"Chenna","year":"2003","journal-title":"Nucleic Acids Res"},{"key":"2024121118013891500_B3","doi-asserted-by":"crossref","first-page":"426","DOI":"10.1093\/bioinformatics\/btg430","article-title":"The Jalview Java alignment editor","volume":"20","author":"Clamp","year":"2004","journal-title":"Bioinformatics"},{"key":"2024121118013891500_B4","first-page":"23","article-title":"High throughput sequencing and comparative genomics of foot-and-mouth disease virus","volume":"126","author":"Carrillo","year":"2006","journal-title":"Dev. 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