{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,18]],"date-time":"2026-01-18T13:33:43Z","timestamp":1768743223247,"version":"3.49.0"},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"16","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":3390,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2007,8,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: The R\/Bioconductor package beadarray allows raw data from Illumina experiments to be read and stored in convenient R classes. Users are free to choose between various methods of image processing, background correction and normalization in their analysis rather than using the defaults in Illumina's; proprietary software. The package also allows quality assessment to be carried out on the raw data. The data can then be summarized and stored in a format which can be used by other R\/Bioconductor packages to perform downstream analyses. Summarized data processed by Illumina's; BeadStudio software can also be read and analysed in the same manner.<\/jats:p>\n               <jats:p>Availability: The beadarray package is available from the Bioconductor web page at www.bioconductor.org. A user's; guide and example data sets are provided with the package.<\/jats:p>\n               <jats:p>Contact: \u00a0md392@cam.ac.uk<\/jats:p>","DOI":"10.1093\/bioinformatics\/btm311","type":"journal-article","created":{"date-parts":[[2007,6,24]],"date-time":"2007-06-24T21:42:57Z","timestamp":1182721377000},"page":"2183-2184","source":"Crossref","is-referenced-by-count":394,"title":["beadarray: R classes and methods for Illumina bead-based data"],"prefix":"10.1093","volume":"23","author":[{"given":"Mark J.","family":"Dunning","sequence":"first","affiliation":[{"name":"Department of Oncology, University of Cambridge, CRUK Cambridge Research Institute, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK"}]},{"given":"Mike L.","family":"Smith","sequence":"additional","affiliation":[{"name":"Department of Oncology, University of Cambridge, CRUK Cambridge Research Institute, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK"}]},{"given":"Matthew E.","family":"Ritchie","sequence":"additional","affiliation":[{"name":"Department of Oncology, University of Cambridge, CRUK Cambridge Research Institute, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK"}]},{"given":"Simon","family":"Tavar\u00e9","sequence":"additional","affiliation":[{"name":"Department of Oncology, University of Cambridge, CRUK Cambridge Research Institute, Li Ka Shing Centre, Robinson Way, Cambridge, CB2 0RE, UK"}]}],"member":"286","published-online":{"date-parts":[[2007,6,22]]},"reference":[{"key":"2024121117590770900_B1","first-page":"1","article-title":"Quality control and low-level statistical analysis of Illumina BeadArrays","volume":"4","author":"Dunning","year":"2006","journal-title":"Revstat"},{"key":"2024121117590770900_B2","article-title":"IlluminaGUI: Graphical User Interface for analyzing gene expression data generated on the Illumina platform","volume-title":"Bioinformatics","author":"Eggle","year":"2007"},{"key":"2024121117590770900_B3","doi-asserted-by":"crossref","first-page":"307","DOI":"10.1093\/bioinformatics\/btg405","article-title":"affy\u2013analysis of Affymetrix GeneChip data at the probe level","volume":"20","author":"Gautier","year":"2004","journal-title":"Bioinformatics"},{"key":"2024121117590770900_B4","doi-asserted-by":"crossref","first-page":"R80","DOI":"10.1186\/gb-2004-5-10-r80","article-title":"Bioconductor: open software development for computational biology and bioinformatics","volume":"5","author":"Gentleman","year":"2004","journal-title":"Genome Biol"},{"key":"2024121117590770900_B5","doi-asserted-by":"crossref","first-page":"870","DOI":"10.1101\/gr.2255804","article-title":"Decoding randomly ordered DNA arrays","volume":"14","author":"Gunderson","year":"2004","journal-title":"Genome Res"},{"key":"2024121117590770900_B6","doi-asserted-by":"crossref","first-page":"2347","DOI":"10.1101\/gr.2739104","article-title":"A novel, high-performance random array platform for quantitative gene expression profiling","volume":"14","author":"Kuhn","year":"2004","journal-title":"Genome Res"},{"key":"2024121117590770900_B7","doi-asserted-by":"crossref","first-page":"397","DOI":"10.1007\/0-387-29362-0_23","article-title":"Limma: linear models for microarray data","volume-title":"Bioinformatics and Computational Biology Solutions Using R and Bioconductor","author":"Smyth","year":"2005"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/23\/16\/2183\/61051600\/bioinformatics_23_16_2183.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/23\/16\/2183\/61051600\/bioinformatics_23_16_2183.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2024,12,11]],"date-time":"2024-12-11T22:14:57Z","timestamp":1733955297000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/23\/16\/2183\/198810"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2007,6,22]]},"references-count":7,"journal-issue":{"issue":"16","published-print":{"date-parts":[[2007,8,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btm311","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2007,8,15]]},"published":{"date-parts":[[2007,6,22]]}}}