{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,26]],"date-time":"2025-10-26T21:01:09Z","timestamp":1761512469581},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"1","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008,1,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: We present a Cytoscape plugin for the inference and visualization of networks from high-resolution mass spectrometry metabolomic data. The software also provides access to basic topological analysis. This open source, multi-platform software has been successfully used to interpret metabolomic experiments and will enable others using filtered, high mass accuracy mass spectrometric data sets to build and analyse networks.<\/jats:p>\n               <jats:p>Availability: \u00a0http:\/\/compbio.dcs.gla.ac.uk\/fabien\/abinitio\/abinitio.html<\/jats:p>\n               <jats:p>Contact: \u00a0Fabien.Jourdan@toulouse.inra.fr<\/jats:p>\n               <jats:p>Supplementary information: \u00a0http:\/\/compbio.dcs.gla.ac.uk\/fabien\/abinitio\/doc\/Supplementary.pdf<\/jats:p>","DOI":"10.1093\/bioinformatics\/btm536","type":"journal-article","created":{"date-parts":[[2007,11,15]],"date-time":"2007-11-15T01:25:39Z","timestamp":1195089939000},"page":"143-145","source":"Crossref","is-referenced-by-count":56,"title":["MetaNetter: inference and visualization of high-resolution metabolomic networks"],"prefix":"10.1093","volume":"24","author":[{"given":"Fabien","family":"Jourdan","sequence":"first","affiliation":[{"name":"1 UMR1089 X\u00e9nobiotiques INRA-ENVT, 180 chemin de Tournefeuille, St-Martin-du-Touch, BP3 31931 Toulouse, France, 2Groningen Bioinformatics Centre, University of Groningen, 9751NN Haren, The Netherlands, 3Institute of Biomedical and Life Sciences and4Bioinformatics Research Centre, University of Glasgow, Glasgow G12 8QQ, UK"}]},{"given":"Rainer","family":"Breitling","sequence":"additional","affiliation":[{"name":"1 UMR1089 X\u00e9nobiotiques INRA-ENVT, 180 chemin de Tournefeuille, St-Martin-du-Touch, BP3 31931 Toulouse, France, 2Groningen Bioinformatics Centre, University of Groningen, 9751NN Haren, The Netherlands, 3Institute of Biomedical and Life Sciences and4Bioinformatics Research Centre, University of Glasgow, Glasgow G12 8QQ, UK"}]},{"given":"Michael P.","family":"Barrett","sequence":"additional","affiliation":[{"name":"1 UMR1089 X\u00e9nobiotiques INRA-ENVT, 180 chemin de Tournefeuille, St-Martin-du-Touch, BP3 31931 Toulouse, France, 2Groningen Bioinformatics Centre, University of Groningen, 9751NN Haren, The Netherlands, 3Institute of Biomedical and Life Sciences and4Bioinformatics Research Centre, University of Glasgow, Glasgow G12 8QQ, UK"}]},{"given":"David","family":"Gilbert","sequence":"additional","affiliation":[{"name":"1 UMR1089 X\u00e9nobiotiques INRA-ENVT, 180 chemin de Tournefeuille, St-Martin-du-Touch, BP3 31931 Toulouse, France, 2Groningen Bioinformatics Centre, University of Groningen, 9751NN Haren, The Netherlands, 3Institute of Biomedical and Life Sciences and4Bioinformatics Research Centre, University of Glasgow, Glasgow G12 8QQ, UK"}]}],"member":"286","published-online":{"date-parts":[[2007,11,14]]},"reference":[{"key":"2023020209443459400_B1","doi-asserted-by":"crossref","first-page":"217","DOI":"10.1089\/15362310260256882","article-title":"Nontergeted metabolome analysis by use of fourier transform ion cyclotron mass spectrometry","volume":"6","author":"Aharoni","year":"2002","journal-title":"Omics"},{"key":"2023020209443459400_B2","first-page":"75","article-title":"Multiscale visualization of small world networks","volume-title":"IEEE Symposium on Information Visualization.","author":"Auber","year":"2003"},{"key":"2023020209443459400_B3","doi-asserted-by":"crossref","first-page":"155","DOI":"10.1007\/s11306-006-0029-z","article-title":"Ab initio prediction of metabolic networks using fourier transform mass spectrometry data","volume":"2","author":"Breitling","year":"2006","journal-title":"Metabolomics"},{"key":"2023020209443459400_B4","doi-asserted-by":"crossref","first-page":"3565","DOI":"10.1093\/bioinformatics\/bth445","article-title":"Discovery of meaningful associations in genomic data using partial correlation coefficients","volume":"20","author":"de la Fuente","year":"2004","journal-title":"Bioinformatics"},{"key":"2023020209443459400_B5","doi-asserted-by":"crossref","first-page":"651","DOI":"10.1038\/35036627","article-title":"The large-scale organization of metabolic networks","volume":"407","author":"Jeong","year":"2000","journal-title":"Nature"},{"key":"2023020209443459400_B6","article-title":"Exploration of biological network centralities with centibin","volume":"219","author":"Junker","year":"2006","journal-title":"BMC Bioinformatics"},{"key":"2023020209443459400_B7","doi-asserted-by":"crossref","first-page":"109","DOI":"10.1186\/1471-2105-7-109","article-title":"VANTED: a system for advanced data analysis and visualization in the context of biological networks","volume":"7","author":"Junker","year":"2006","journal-title":"BMC Bioinformatics"},{"key":"2023020209443459400_B8","doi-asserted-by":"crossref","first-page":"842","DOI":"10.1038\/ng1815","article-title":"The genetics of plant metabolism","volume":"38","author":"Keurentjes","year":"2006","journal-title":"Nat. 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