{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2023,2,2]],"date-time":"2023-02-02T10:40:12Z","timestamp":1675334412466},"reference-count":1,"publisher":"Oxford University Press (OUP)","issue":"5","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":3242,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008,3,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: The BioArray Software Environment (BASE) is a very popular MIAME-compliant, web-based microarray data repository. However in BASE, like in most other microarray data repositories, the experiment annotation and raw data uploading can be very timeconsuming, especially for large microarray experiments.<\/jats:p>\n               <jats:p>Results: We developed KUTE (Karmanos Universal daTabase for microarray Experiments), as a plug-in for BASE 2.0 that addresses these issues. KUTE provides an automatic experiment annotation feature and a completely redesigned data work-flow that dramatically reduce the human\u2013computer interaction time. For instance, in BASE 2.0 a typical Affymetrix experiment involving 100 arrays required 4 h 30 min of user interaction time forexperiment annotation, and 45 min for data upload\/download. In contrast, for the same experiment, KUTE required only 28 min of user interaction time for experiment annotation, and 3.3 min for data upload\/download.<\/jats:p>\n               <jats:p>Availability: \u00a0http:\/\/vortex.cs.wayne.edu\/kute\/index.html<\/jats:p>\n               <jats:p>Contact: \u00a0sod@cs.wayne.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/btm559","type":"journal-article","created":{"date-parts":[[2007,11,18]],"date-time":"2007-11-18T01:26:02Z","timestamp":1195349162000},"page":"738-740","source":"Crossref","is-referenced-by-count":4,"title":["KUTE-BASE: storing, downloading and exporting MIAME-compliant microarray experiments in minutes rather than hours"],"prefix":"10.1093","volume":"24","author":[{"given":"Sorin","family":"Draghici","sequence":"first","affiliation":[{"name":"1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202, 2Perinatology Research Branch-NIH\/NICHD, 4 Brush, 3990 John R and 3Barbara Ann Karmanos Cancer Institute, 110 Warren Avenue Detroit, MI 48201, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Adi L.","family":"Tarca","sequence":"additional","affiliation":[{"name":"1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202, 2Perinatology Research Branch-NIH\/NICHD, 4 Brush, 3990 John R and 3Barbara Ann Karmanos Cancer Institute, 110 Warren Avenue Detroit, MI 48201, USA"},{"name":"1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202, 2Perinatology Research Branch-NIH\/NICHD, 4 Brush, 3990 John R and 3Barbara Ann Karmanos Cancer Institute, 110 Warren Avenue Detroit, MI 48201, USA"},{"name":"1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202, 2Perinatology Research Branch-NIH\/NICHD, 4 Brush, 3990 John R and 3Barbara Ann Karmanos Cancer Institute, 110 Warren Avenue Detroit, MI 48201, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Longfei","family":"Yu","sequence":"additional","affiliation":[{"name":"1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202, 2Perinatology Research Branch-NIH\/NICHD, 4 Brush, 3990 John R and 3Barbara Ann Karmanos Cancer Institute, 110 Warren Avenue Detroit, MI 48201, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Stephen","family":"Ethier","sequence":"additional","affiliation":[{"name":"1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202, 2Perinatology Research Branch-NIH\/NICHD, 4 Brush, 3990 John R and 3Barbara Ann Karmanos Cancer Institute, 110 Warren Avenue Detroit, MI 48201, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Roberto","family":"Romero","sequence":"additional","affiliation":[{"name":"1 Department of Computer Science, Wayne State University, 431 State Hall, Detroit, MI 48202, 2Perinatology Research Branch-NIH\/NICHD, 4 Brush, 3990 John R and 3Barbara Ann Karmanos Cancer Institute, 110 Warren Avenue Detroit, MI 48201, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2007,11,17]]},"reference":[{"key":"2023020210115372100_B1","doi-asserted-by":"crossref","first-page":"1465","DOI":"10.1186\/gb-2002-3-8-software0003","article-title":"BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data","volume":"3","author":"Saal","year":"2002","journal-title":"Genome Biol"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/24\/5\/738\/49051810\/bioinformatics_24_5_738.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/24\/5\/738\/49051810\/bioinformatics_24_5_738.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,2]],"date-time":"2023-02-02T10:12:13Z","timestamp":1675332733000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/24\/5\/738\/200709"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2007,11,17]]},"references-count":1,"journal-issue":{"issue":"5","published-print":{"date-parts":[[2008,3,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btm559","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2008,3,1]]},"published":{"date-parts":[[2007,11,17]]}}}