{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,9]],"date-time":"2026-03-09T19:58:16Z","timestamp":1773086296064,"version":"3.50.1"},"reference-count":9,"publisher":"Oxford University Press (OUP)","issue":"3","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":3196,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008,2,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Progress in structural biology depends on several key technologies. In particular tools for alignment and superposition of protein structures are indispensable. Here we describe the use of the TopMatch web service, an effective computational tool for protein structure alignment, for the visualization of structural similarities, and for highlighting relationships found in protein classifications. We provide several instructive examples.<\/jats:p>\n               <jats:p>Availability: TopMatch is available as a public web service at http:\/\/services.came.sbg.ac.at<\/jats:p>\n               <jats:p>Contact: \u00a0sippl@came.sbg.ac.at<\/jats:p>","DOI":"10.1093\/bioinformatics\/btm622","type":"journal-article","created":{"date-parts":[[2008,1,4]],"date-time":"2008-01-04T01:13:32Z","timestamp":1199409212000},"page":"426-427","source":"Crossref","is-referenced-by-count":108,"title":["A note on difficult structure alignment problems"],"prefix":"10.1093","volume":"24","author":[{"given":"Manfred J.","family":"Sippl","sequence":"first","affiliation":[{"name":"Center of Applied Molecular Engineering, Division of Bioinformatics, Department of Molecular Biology, University of Salzburg, Hellbrunnerstr. 34, 5020 Salzburg, Austria"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Markus","family":"Wiederstein","sequence":"additional","affiliation":[{"name":"Center of Applied Molecular Engineering, Division of Bioinformatics, Department of Molecular Biology, University of Salzburg, Hellbrunnerstr. 34, 5020 Salzburg, Austria"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2008,1,2]]},"reference":[{"key":"2023061011434465600_B1","doi-asserted-by":"crossref","DOI":"10.1093\/nar\/gkm993","article-title":"Data growth and its impact on the SCOP database: new developments","author":"Andreeva","year":"2007","journal-title":"Nucleic Acids Res"},{"key":"2023061011434465600_B2","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1093\/nar\/28.1.235","article-title":"The Protein Data Bank","volume":"28","author":"Berman","year":"2000","journal-title":"Nucleic Acids Res"},{"key":"2023061011434465600_B3","doi-asserted-by":"crossref","first-page":"123","DOI":"10.1016\/S1359-0278(96)00021-1","article-title":"Optimum superimposition of protein structures: ambiguities and implications","volume":"1","author":"Feng","year":"1996","journal-title":"Fold. 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