{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,5,12]],"date-time":"2026-05-12T23:34:00Z","timestamp":1778628840197,"version":"3.51.4"},"reference-count":3,"publisher":"Oxford University Press (OUP)","issue":"6","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008,3,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: The Summary Tree Explorer (STE) is a Java application for interactively exploring sets of phylogenetic trees using two coupled representations: a node-and-link diagram and a textual list of common clades. Selection, pruning, filtering or re-rooting in one representation is immediately reflected in the other. While summary trees are more effective at showing the relationship among clades, they can only show a consistent subset of those that appear in the textual list. Working with both representations mitigates the disadvantages of having to choose just one.<\/jats:p>\n               <jats:p>Availability: STE, along with several sample datasets, is available at http:\/\/cityscape.inf.cs.cmu.edu\/phylogeny\/<\/jats:p>\n               <jats:p>Contact: \u00a0mad@cs.cmu.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/btn038","type":"journal-article","created":{"date-parts":[[2008,2,9]],"date-time":"2008-02-09T01:53:52Z","timestamp":1202522032000},"page":"868-869","source":"Crossref","is-referenced-by-count":2,"title":["Interactive visualization software for exploring phylogenetic trees and clades"],"prefix":"10.1093","volume":"24","author":[{"given":"Mark","family":"Derthick","sequence":"first","affiliation":[{"name":"Human-Computer Interaction Institute, Carnegie Mellon University, Pittsburgh, PA, 15213, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2008,2,8]]},"reference":[{"key":"2023020209511379700_B1","first-page":"71","article-title":"Case study: visualizing sets of evolutionary trees","volume-title":"8th IEEE Symposium on Information Visualization.","author":"Amenta","year":"2002"},{"key":"2023020209511379700_B2","doi-asserted-by":"crossref","first-page":"535","DOI":"10.1109\/TSE.2004.44","article-title":"Toolkit Design for Interactive Structured Graphics","volume":"30","author":"Bederson","year":"2004","journal-title":"IEEE Trans. Software Eng"},{"key":"2023020209511379700_B3","article-title":"BADGER: Bayesian Analysis to Describe Genomic Evolution by Rearrangement","author":"Simon","year":"2004"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/24\/6\/868\/49045603\/bioinformatics_24_6_868.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/24\/6\/868\/49045603\/bioinformatics_24_6_868.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,2]],"date-time":"2023-02-02T09:56:53Z","timestamp":1675331813000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/24\/6\/868\/194261"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2008,2,8]]},"references-count":3,"journal-issue":{"issue":"6","published-print":{"date-parts":[[2008,3,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btn038","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2008,3,15]]},"published":{"date-parts":[[2008,2,8]]}}}