{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,15]],"date-time":"2026-01-15T22:27:20Z","timestamp":1768516040040,"version":"3.49.0"},"reference-count":6,"publisher":"Oxford University Press (OUP)","issue":"6","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008,3,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Prophinder is a prophage prediction tool coupled with a prediction database, a web server and web service. Predicted prophages will help to fill the gaps in the current sparse phage sequence space, which should cover an estimated 100 million species. Systematic and reliable predictions will enable further studies of prophages contribution to the bacteriophage gene pool and to better understand gene shuffling between prophages and phages infecting the same host.<\/jats:p>\n               <jats:p>Availability: Softare is available at http:\/\/aclame.ulb.ac.be\/prophinder<\/jats:p>\n               <jats:p>Contact: \u00a0gipsi@scmbb.ulb.ac.be<\/jats:p>\n               <jats:p>Supplementary information: Supplementary data is available on http:\/\/aclame.ulb.ac.be\/Tools\/Prophinder\/evaluations_table.html.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btn043","type":"journal-article","created":{"date-parts":[[2008,2,1]],"date-time":"2008-02-01T01:14:03Z","timestamp":1201828443000},"page":"863-865","source":"Crossref","is-referenced-by-count":195,"title":["Prophinder: a computational tool for prophage prediction in prokaryotic genomes"],"prefix":"10.1093","volume":"24","author":[{"given":"Gipsi","family":"Lima-Mendez","sequence":"first","affiliation":[{"name":"Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, 1050 Bruxelles, Belgium"}]},{"given":"Jacques","family":"Van Helden","sequence":"additional","affiliation":[{"name":"Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, 1050 Bruxelles, Belgium"}]},{"given":"Ariane","family":"Toussaint","sequence":"additional","affiliation":[{"name":"Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, 1050 Bruxelles, Belgium"}]},{"given":"Rapha\u00ebl","family":"Leplae","sequence":"additional","affiliation":[{"name":"Laboratoire de Bioinformatique des G\u00e9nomes et des R\u00e9seaux (BiGRe), Universit\u00e9 Libre de Bruxelles, 1050 Bruxelles, Belgium"}]}],"member":"286","published-online":{"date-parts":[[2008,1,30]]},"reference":[{"key":"2023020209512317500_B1","doi-asserted-by":"crossref","first-page":"3389","DOI":"10.1093\/nar\/25.17.3389","article-title":"Gapped BLAST and PSI-BLAST: a new generation of protein database search programs","volume":"25","author":"Altschul","year":"1997","journal-title":"Nucl. 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