{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,13]],"date-time":"2026-02-13T06:59:34Z","timestamp":1770965974737,"version":"3.50.1"},"reference-count":6,"publisher":"Oxford University Press (OUP)","issue":"7","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":3141,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008,4,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Genomes of more than 60 fungal species have been sequenced to date, yet there has been no systematic approach to analyze fungal transcription factors (TFs) kingdom widely. We developed a standardized pipeline for annotating TFs in fungal genomes. Resulting data have been archived in a new database termed the Fungal Transcription Factor Database (FTFD). In FTFD, 31 832 putative fungal TFs, identified from 62 fungal and 3 Oomycete species, were classified into 61 families and phylogenetically analyzed. The FTFD will serve as a community resource supporting comparative analyses of the distribution and domain structure of TFs within and across species.<\/jats:p>\n               <jats:p>Availability: All data described in this study can be browsed through the FTFD web site at http:\/\/ftfd.snu.ac.kr\/.<\/jats:p>\n               <jats:p>Contact: \u00a0yonglee@snu.ac.kr<\/jats:p>","DOI":"10.1093\/bioinformatics\/btn058","type":"journal-article","created":{"date-parts":[[2008,2,28]],"date-time":"2008-02-28T01:14:32Z","timestamp":1204161272000},"page":"1024-1025","source":"Crossref","is-referenced-by-count":159,"title":["FTFD: an informatics pipeline supporting phylogenomic analysis of fungal transcription factors"],"prefix":"10.1093","volume":"24","author":[{"given":"Jongsun","family":"Park","sequence":"first","affiliation":[{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"},{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"},{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"}]},{"given":"Jaejin","family":"Park","sequence":"additional","affiliation":[{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"},{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"}]},{"given":"Suwang","family":"Jang","sequence":"additional","affiliation":[{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"}]},{"given":"Seryun","family":"Kim","sequence":"additional","affiliation":[{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"},{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"}]},{"given":"Sunghyung","family":"Kong","sequence":"additional","affiliation":[{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"},{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"}]},{"given":"Jaeyoung","family":"Choi","sequence":"additional","affiliation":[{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"},{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"}]},{"given":"Kyohun","family":"Ahn","sequence":"additional","affiliation":[{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"}]},{"given":"Juhyeon","family":"Kim","sequence":"additional","affiliation":[{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"}]},{"given":"Seungmin","family":"Lee","sequence":"additional","affiliation":[{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"}]},{"given":"Sunggon","family":"Kim","sequence":"additional","affiliation":[{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"}]},{"given":"Bongsoo","family":"Park","sequence":"additional","affiliation":[{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"}]},{"given":"Kyongyong","family":"Jung","sequence":"additional","affiliation":[{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"},{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"}]},{"given":"Soonok","family":"Kim","sequence":"additional","affiliation":[{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"},{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"}]},{"given":"Seogchan","family":"Kang","sequence":"additional","affiliation":[{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"}]},{"given":"Yong-Hwan","family":"Lee","sequence":"additional","affiliation":[{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"},{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"},{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"},{"name":"1 Fungal Bioinformatics Laboratory, 2Department of Agricultural Biotechnology, 3Center for Fungal Genetic Resource, 4Center for Agricultural Biomaterials, Seoul National University, Seoul 151-921, Korea and 5Pennylvenia State University, University Park, PA 16802, USA"}]}],"member":"286","published-online":{"date-parts":[[2008,2,26]]},"reference":[{"key":"2023020209531098900_B1","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1016\/S0303-7207(98)00076-8","article-title":"A zinc finger homeodomain transcription factor binds specific thyroid hormone response elements","volume":"139","author":"Darling","year":"1998","journal-title":"Mol. 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