{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,13]],"date-time":"2026-02-13T07:46:34Z","timestamp":1770968794787,"version":"3.50.1"},"reference-count":5,"publisher":"Oxford University Press (OUP)","issue":"10","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008,5,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: High-throughput \u2018ChIP-chip\u2019 and \u2018ChIP-seq\u2019 methodologies generate sufficiently large data sets that analysis poses significant informatics challenges, particularly for research groups with modest computational support. To address this challenge, we devised a software platform for storing, analyzing and visualizing high resolution genome-wide binding data. GeneTrack automates several steps of a typical data processing pipeline, including smoothing and peak detection, and facilitates dissemination of the results via the web. Our software is freely available via the Google Project Hosting environment at http:\/\/genetrack.googlecode.com<\/jats:p>\n               <jats:p>Contact: \u00a0iual@psu.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/btn119","type":"journal-article","created":{"date-parts":[[2008,4,4]],"date-time":"2008-04-04T00:45:26Z","timestamp":1207269926000},"page":"1305-1306","source":"Crossref","is-referenced-by-count":92,"title":["GeneTrack\u2014a genomic data processing and visualization framework"],"prefix":"10.1093","volume":"24","author":[{"given":"Istvan","family":"Albert","sequence":"first","affiliation":[{"name":"1 Huck Institutes for the Life Sciences, 2Center for Comparative Genomics and Bioinformatics, Center for Gene Regulation and 3Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, 16802, USA"},{"name":"1 Huck Institutes for the Life Sciences, 2Center for Comparative Genomics and Bioinformatics, Center for Gene Regulation and 3Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, 16802, USA"},{"name":"1 Huck Institutes for the Life Sciences, 2Center for Comparative Genomics and Bioinformatics, Center for Gene Regulation and 3Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, 16802, USA"}]},{"given":"Shinichiro","family":"Wachi","sequence":"additional","affiliation":[{"name":"1 Huck Institutes for the Life Sciences, 2Center for Comparative Genomics and Bioinformatics, Center for Gene Regulation and 3Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, 16802, USA"},{"name":"1 Huck Institutes for the Life Sciences, 2Center for Comparative Genomics and Bioinformatics, Center for Gene Regulation and 3Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, 16802, USA"}]},{"given":"Cizhong","family":"Jiang","sequence":"additional","affiliation":[{"name":"1 Huck Institutes for the Life Sciences, 2Center for Comparative Genomics and Bioinformatics, Center for Gene Regulation and 3Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, 16802, USA"},{"name":"1 Huck Institutes for the Life Sciences, 2Center for Comparative Genomics and Bioinformatics, Center for Gene Regulation and 3Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, 16802, USA"}]},{"given":"B. Franklin","family":"Pugh","sequence":"additional","affiliation":[{"name":"1 Huck Institutes for the Life Sciences, 2Center for Comparative Genomics and Bioinformatics, Center for Gene Regulation and 3Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, 16802, USA"},{"name":"1 Huck Institutes for the Life Sciences, 2Center for Comparative Genomics and Bioinformatics, Center for Gene Regulation and 3Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, 16802, USA"}]}],"member":"286","published-online":{"date-parts":[[2008,4,3]]},"reference":[{"key":"2023020210040254000_B1","doi-asserted-by":"crossref","first-page":"572","DOI":"10.1038\/nature05632","article-title":"Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome","volume":"446","author":"Albert","year":"2007","journal-title":"Nature"},{"key":"2023020210040254000_B2","doi-asserted-by":"crossref","first-page":"960","DOI":"10.1101\/gr.5578007","article-title":"A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly","volume":"17","author":"Blankenberg","year":"2007","journal-title":"Genome Res"},{"key":"2023020210040254000_B3","doi-asserted-by":"crossref","first-page":"996","DOI":"10.1101\/gr.229102","article-title":"The human genome browser at UCSC","volume":"12","author":"Kent","year":"2002","journal-title":"Genome Res"},{"key":"2023020210040254000_B4","first-page":"91","article-title":"Computational approaches to analysis of DNA microarray data","volume":"45","author":"Quackenbush","year":"2006","journal-title":"Methods Inf. 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