{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,19]],"date-time":"2026-01-19T11:28:50Z","timestamp":1768822130895,"version":"3.49.0"},"reference-count":5,"publisher":"Oxford University Press (OUP)","issue":"10","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008,5,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Programmatic access to the UniProt Knowledgebase (UniProtKB) is essential for many bioinformatics applications dealing with protein data. We have created a Java library named UniProtJAPI, which facilitates the integration of UniProt data into Java-based software applications. The library supports queries and similarity searches that return UniProtKB entries in the form of Java objects. These objects contain functional annotations or sequence information associated with a UniProt entry. Here, we briefly describe the UniProtJAPI and demonstrate its usage.<\/jats:p>\n               <jats:p>Availability: \u00a0http:\/\/www.ebi.ac.uk\/uniprot\/remotingAPI<\/jats:p>\n               <jats:p>Contact: \u00a0spatient@ebi.ac.uk<\/jats:p>","DOI":"10.1093\/bioinformatics\/btn122","type":"journal-article","created":{"date-parts":[[2008,4,6]],"date-time":"2008-04-06T00:14:04Z","timestamp":1207440844000},"page":"1321-1322","source":"Crossref","is-referenced-by-count":36,"title":["UniProtJAPI: a remote API for accessing UniProt data"],"prefix":"10.1093","volume":"24","author":[{"given":"Samuel","family":"Patient","sequence":"first","affiliation":[{"name":"The European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Daniela","family":"Wieser","sequence":"additional","affiliation":[{"name":"The European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Michael","family":"Kleen","sequence":"additional","affiliation":[{"name":"The European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ernst","family":"Kretschmann","sequence":"additional","affiliation":[{"name":"The European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Maria","family":"Jesus Martin","sequence":"additional","affiliation":[{"name":"The European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Rolf","family":"Apweiler","sequence":"additional","affiliation":[{"name":"The European Bioinformatics Institute, Hinxton, Cambridge CB10 1SD, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2008,4,4]]},"reference":[{"key":"2023020210022564500_B1","doi-asserted-by":"crossref","first-page":"D434","DOI":"10.1093\/nar\/gkh119","article-title":"IntEnz, the integrated relational enzyme database (Database issue)","volume":"32","author":"Fleischmann","year":"2004","journal-title":"Nucleic Acids Res"},{"key":"2023020210022564500_B2","doi-asserted-by":"crossref","first-page":"D561","DOI":"10.1093\/nar\/gkl958","article-title":"IntAct\u2013open source resource for molecular interaction data (Database issue)","volume":"35","author":"Kerrien","year":"2007","journal-title":"Nucleic Acids Res"},{"key":"2023020210022564500_B3","doi-asserted-by":"crossref","first-page":"W6","DOI":"10.1093\/nar\/gkm291","article-title":"Web services at the European Bioinformatics Institute (Web Server issue)","volume":"35","author":"Labarga","year":"2007","journal-title":"Nucleic Acids Res"},{"key":"2023020210022564500_B4","doi-asserted-by":"crossref","first-page":"D224","DOI":"10.1093\/nar\/gkl841","article-title":"New developments in the InterPro database","volume":"35","author":"Mulder","year":"2007","journal-title":"Nucleic Acids Res"},{"key":"2023020210022564500_B5","doi-asserted-by":"crossref","first-page":"D190","DOI":"10.1093\/nar\/gkm895","article-title":"The Universal Protein Resource (UniProt)","volume":"36","author":"The UniProt Consortium","year":"2008","journal-title":"Nucleic Acids Res"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/24\/10\/1321\/49046200\/bioinformatics_24_10_1321.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/24\/10\/1321\/49046200\/bioinformatics_24_10_1321.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,2]],"date-time":"2023-02-02T10:02:59Z","timestamp":1675332179000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/24\/10\/1321\/178489"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2008,4,4]]},"references-count":5,"journal-issue":{"issue":"10","published-print":{"date-parts":[[2008,5,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btn122","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2008,5,15]]},"published":{"date-parts":[[2008,4,4]]}}}