{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,1,19]],"date-time":"2026-01-19T01:30:28Z","timestamp":1768786228150,"version":"3.49.0"},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"11","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008,6,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: We have developed an online tool called mirEval which can search sequences of up to 10 000 nt for novel microRNAs in multiple organisms. It is a comprehensive tool, easy to use and very informative. It will allow users with no prior knowledge of in-silico detection of microRNAs to take advantage of the most successful approaches to investigate sequences of interest.<\/jats:p>\n               <jats:p>Availability: The mirEval web server is available at http:\/\/tagc.univ-mrs.fr\/mireval<\/jats:p>\n               <jats:p>Contact: \u00a0W.Ritchie@centenary.org.au<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btn137","type":"journal-article","created":{"date-parts":[[2008,5,4]],"date-time":"2008-05-04T04:45:50Z","timestamp":1209876350000},"page":"1394-1396","source":"Crossref","is-referenced-by-count":37,"title":["Mireval: a web tool for simple microRNA prediction in genome sequences"],"prefix":"10.1093","volume":"24","author":[{"given":"William","family":"Ritchie","sequence":"first","affiliation":[{"name":"1 INSERM U928, Technologies Avanc\u00e9es pour le G\u00e9nome et la Clinique, Luminy Case 906, 13288 Marseille, Cedex 09, France, 2Centenary Institute, Gene & Stem Cell Therapy Program, Newtown, 2042 Sydney, Australia and 3Univ Paris-Sud 11, CNRS UMR 8621, Institut de G\u00e9n\u00e9tique et Microbiologie, Bat 400, 91405 Orsay Cedex, France"},{"name":"1 INSERM U928, Technologies Avanc\u00e9es pour le G\u00e9nome et la Clinique, Luminy Case 906, 13288 Marseille, Cedex 09, France, 2Centenary Institute, Gene & Stem Cell Therapy Program, Newtown, 2042 Sydney, Australia and 3Univ Paris-Sud 11, CNRS UMR 8621, Institut de G\u00e9n\u00e9tique et Microbiologie, Bat 400, 91405 Orsay Cedex, France"}]},{"given":"Fran\u00e7ois-Xavier","family":"Th\u00e9odule","sequence":"additional","affiliation":[{"name":"1 INSERM U928, Technologies Avanc\u00e9es pour le G\u00e9nome et la Clinique, Luminy Case 906, 13288 Marseille, Cedex 09, France, 2Centenary Institute, Gene & Stem Cell Therapy Program, Newtown, 2042 Sydney, Australia and 3Univ Paris-Sud 11, CNRS UMR 8621, Institut de G\u00e9n\u00e9tique et Microbiologie, Bat 400, 91405 Orsay Cedex, France"}]},{"given":"Daniel","family":"Gautheret","sequence":"additional","affiliation":[{"name":"1 INSERM U928, Technologies Avanc\u00e9es pour le G\u00e9nome et la Clinique, Luminy Case 906, 13288 Marseille, Cedex 09, France, 2Centenary Institute, Gene & Stem Cell Therapy Program, Newtown, 2042 Sydney, Australia and 3Univ Paris-Sud 11, CNRS UMR 8621, Institut de G\u00e9n\u00e9tique et Microbiologie, Bat 400, 91405 Orsay Cedex, France"}]}],"member":"286","published-online":{"date-parts":[[2008,5,3]]},"reference":[{"key":"2023020210024778000_B1","doi-asserted-by":"crossref","first-page":"21","DOI":"10.1016\/j.cell.2004.12.031","article-title":"Phylogenetic shadowing and computational identification of human microRNA Genes","volume":"120","author":"Berezikov","year":"2005","journal-title":"Cell"},{"key":"2023020210024778000_B2","doi-asserted-by":"crossref","first-page":"901","DOI":"10.1101\/gr.3577405","article-title":"Distribution and intensity of constraint in mammalian genomic sequence","volume":"15","author":"Cooper","year":"2005","journal-title":"Genome Res"},{"key":"2023020210024778000_B3","doi-asserted-by":"crossref","DOI":"10.1093\/nar\/gkm988","article-title":"Ensembl 2008","volume-title":"Nucleic Acids Res.","author":"Flicek","year":"2007"},{"key":"2023020210024778000_B4","doi-asserted-by":"crossref","DOI":"10.1093\/nar\/gkm952","article-title":"miRBase: tools for microRNA genomics","volume-title":"Nucleic Acids Res.","author":"Griffiths-Jones","year":"2007"},{"key":"2023020210024778000_B5","doi-asserted-by":"crossref","first-page":"167","DOI":"10.1007\/BF00818163","article-title":"Fast folding and comparison of RNA secondary structures","volume":"125","author":"Hofacker","year":"1994","journal-title":"Monatshefte f Chemie"},{"key":"2023020210024778000_B6","first-page":"301","article-title":"The NCBI. publicly available tools and resources on the Web","volume":"132","author":"Jenuth","year":"2000","journal-title":"Methods Mol. 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