{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,10,27]],"date-time":"2026-10-27T20:33:34Z","timestamp":1793133214732,"version":"4.5.0"},"reference-count":11,"publisher":"Oxford University Press (OUP)","issue":"13","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":3063,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008,7,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: The wcd system is an open source tool for clustering expressed sequence tags (EST) and other DNA and RNA sequences. wcd allows efficient all-versus-all comparison of ESTs using either the d2 distance function or edit distance, improving existing implementations of d2. It supports merging, refinement and reclustering of clusters. It is \u2018drop in\u2019 compatible with the StackPack clustering package. wcd supports parallelization under both shared memory and cluster architectures. It is distributed with an EMBOSS wrapper allowing wcd to be installed as part of an EMBOSS installation (and so provided by a web server).<\/jats:p>\n               <jats:p>Availability: wcd is distributed under a GPL licence and is available from http:\/\/code.google.com\/p\/wcdest<\/jats:p>\n               <jats:p>Contact: \u00a0scott.hazelhurst@wits.ac.za<\/jats:p>\n               <jats:p>Supplementary information: Additional experimental results. The wcd manual, a companion paper describing underlying algorithms, and all datasets used for experimentation can also be found at www.bioinf.wits.ac.za\/~scott\/wcdsupp.html<\/jats:p>","DOI":"10.1093\/bioinformatics\/btn203","type":"journal-article","created":{"date-parts":[[2008,5,15]],"date-time":"2008-05-15T00:34:38Z","timestamp":1210811678000},"page":"1542-1546","source":"Crossref","is-referenced-by-count":29,"title":["An overview of the wcd EST clustering tool"],"prefix":"10.1093","volume":"24","author":[{"given":"Scott","family":"Hazelhurst","sequence":"first","affiliation":[{"name":"1 Wits Bioinformatics, University of the Witwatersrand, Johannesburg, Private Bag 3, 2050 Wits, 2South African National Bioinformatics Institute, University of the Western Cape, Private Bag X17, Bellville 7535, South Africa and 3Universit\u00e4t Bielefeld, AG Genominformatik, Technische Fakult\u00e4t, Postfach 100131, 33501 Bielefeld, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Winston","family":"Hide","sequence":"additional","affiliation":[{"name":"1 Wits Bioinformatics, University of the Witwatersrand, Johannesburg, Private Bag 3, 2050 Wits, 2South African National Bioinformatics Institute, University of the Western Cape, Private Bag X17, Bellville 7535, South Africa and 3Universit\u00e4t Bielefeld, AG Genominformatik, Technische Fakult\u00e4t, Postfach 100131, 33501 Bielefeld, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Zsuzsanna","family":"Lipt\u00e1k","sequence":"additional","affiliation":[{"name":"1 Wits Bioinformatics, University of the Witwatersrand, Johannesburg, Private Bag 3, 2050 Wits, 2South African National Bioinformatics Institute, University of the Western Cape, Private Bag X17, Bellville 7535, South Africa and 3Universit\u00e4t Bielefeld, AG Genominformatik, Technische Fakult\u00e4t, Postfach 100131, 33501 Bielefeld, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Ramon","family":"Nogueira","sequence":"additional","affiliation":[{"name":"1 Wits Bioinformatics, University of the Witwatersrand, Johannesburg, Private Bag 3, 2050 Wits, 2South African National Bioinformatics Institute, University of the Western Cape, Private Bag X17, Bellville 7535, South Africa and 3Universit\u00e4t Bielefeld, AG Genominformatik, Technische Fakult\u00e4t, Postfach 100131, 33501 Bielefeld, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Richard","family":"Starfield","sequence":"additional","affiliation":[{"name":"1 Wits Bioinformatics, University of the Witwatersrand, Johannesburg, Private Bag 3, 2050 Wits, 2South African National Bioinformatics Institute, University of the Western Cape, Private Bag X17, Bellville 7535, South Africa and 3Universit\u00e4t Bielefeld, AG Genominformatik, Technische Fakult\u00e4t, Postfach 100131, 33501 Bielefeld, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2008,5,14]]},"reference":[{"key":"2023020210350864500_B1","article-title":"Algorithms for clustering expressed sequence tags: the wcd tool","volume":"40","author":"Hazelhurst","year":"2008","journal-title":"South African Comput. 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