{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,25]],"date-time":"2025-09-25T17:23:44Z","timestamp":1758821024184},"reference-count":8,"publisher":"Oxford University Press (OUP)","issue":"12","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":3079,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008,6,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Cytoscape enhanced search plugin (ESP) enables searching complex biological networks on multiple attribute fields using logical operators and wildcards. Queries use an intuitive syntax and simple search line interface. ESP is implemented as a Cytoscape plugin and complements existing search functions in the Cytoscape network visualization and analysis software, allowing users to easily identify nodes, edges and subgraphs of interest, even for very large networks.<\/jats:p>\n               <jats:p>Availabiity: \u00a0http:\/\/chianti.ucsd.edu\/cyto_web\/plugins\/<\/jats:p>\n               <jats:p>Contact: \u00a0ashkenaz@agri.huji.ac.il<\/jats:p>","DOI":"10.1093\/bioinformatics\/btn208","type":"journal-article","created":{"date-parts":[[2008,4,30]],"date-time":"2008-04-30T00:25:06Z","timestamp":1209515106000},"page":"1465-1466","source":"Crossref","is-referenced-by-count":9,"title":["Cytoscape ESP: simple search of complex biological networks"],"prefix":"10.1093","volume":"24","author":[{"given":"Maital","family":"Ashkenazi","sequence":"first","affiliation":[{"name":"1 Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Hebrew University of Jerusalem, Rehovot, Israel, 2Terrence Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, ON, Canada, 3Agilent Technologies, Santa Clara, CA and 4Center for Computational Medicine and Biology, University of Michigan, Ann Arbor, MI, USA"}]},{"given":"Gary D.","family":"Bader","sequence":"additional","affiliation":[{"name":"1 Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Hebrew University of Jerusalem, Rehovot, Israel, 2Terrence Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, ON, Canada, 3Agilent Technologies, Santa Clara, CA and 4Center for Computational Medicine and Biology, University of Michigan, Ann Arbor, MI, USA"}]},{"given":"Allan","family":"Kuchinsky","sequence":"additional","affiliation":[{"name":"1 Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Hebrew University of Jerusalem, Rehovot, Israel, 2Terrence Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, ON, Canada, 3Agilent Technologies, Santa Clara, CA and 4Center for Computational Medicine and Biology, University of Michigan, Ann Arbor, MI, USA"}]},{"given":"Menachem","family":"Moshelion","sequence":"additional","affiliation":[{"name":"1 Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Hebrew University of Jerusalem, Rehovot, Israel, 2Terrence Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, ON, Canada, 3Agilent Technologies, Santa Clara, CA and 4Center for Computational Medicine and Biology, University of Michigan, Ann Arbor, MI, USA"}]},{"given":"David J.","family":"States","sequence":"additional","affiliation":[{"name":"1 Robert H. Smith Institute of Plant Sciences and Genetics in Agriculture, Hebrew University of Jerusalem, Rehovot, Israel, 2Terrence Donnelly Centre for Cellular and Biomolecular Research, University of Toronto, Toronto, ON, Canada, 3Agilent Technologies, Santa Clara, CA and 4Center for Computational Medicine and Biology, University of Michigan, Ann Arbor, MI, USA"}]}],"member":"286","published-online":{"date-parts":[[2008,4,28]]},"reference":[{"key":"2023020210101681700_B1","doi-asserted-by":"crossref","first-page":"790","DOI":"10.1104\/pp.105.065029","article-title":"Early effects of salinity on water transport in Arabidopsis roots. Molecular and cellular features of Aquaporin expression","volume":"139","author":"Boursiac","year":"2005","journal-title":"Plant Physiol"},{"key":"2023020210101681700_B2","doi-asserted-by":"crossref","first-page":"D452","DOI":"10.1093\/nar\/gkh052","article-title":"IntAct: an open source molecular interaction database","volume":"32","author":"Hermjakob","year":"2004","journal-title":"Nucleic Acids Res"},{"key":"2023020210101681700_B3","doi-asserted-by":"crossref","first-page":"D566","DOI":"10.1093\/nar\/gkl859","article-title":"Michigan molecular interactions (MiMI): putting the jigsaw puzzle together","volume":"35","author":"Jayapandian","year":"2007","journal-title":"Nucleic Acids Res"},{"key":"2023020210101681700_B4","doi-asserted-by":"crossref","first-page":"347","DOI":"10.1111\/j.1365-313X.2007.03052.x","article-title":"The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses","volume":"50","author":"Kilian","year":"2007","journal-title":"Plant J"},{"key":"2023020210101681700_B5","doi-asserted-by":"crossref","unstructured":"Shannon\n              P\n            \n            \u00a0et al.\n          Cytoscape: a software environment for integrated models of biomolecular interaction networks\n          Genome Res\n          2003\n          13\n          2498\n          2504\n          Available at http:\/\/www.cytoscape.org\/","DOI":"10.1101\/gr.1239303"},{"key":"2023020210101681700_B6","doi-asserted-by":"crossref","first-page":"1313","DOI":"10.1104\/pp.105.070110","article-title":"Enhanced tolerance to environmental stress in transgenic plants expressing the transcriptional coactivator multiprotein bridging factor 1c","volume":"139","author":"Suzuki","year":"2005","journal-title":"Plant Physiol"},{"key":"2023020210101681700_B7","doi-asserted-by":"crossref","first-page":"1","DOI":"10.1007\/s00425-003-1105-5","article-title":"Plant responses to drought, salinity and extreme temperatures: towards genetic engineering for stress tolerance","volume":"218","author":"Wang","year":"2003","journal-title":"Planta"},{"key":"2023020210101681700_B8","doi-asserted-by":"crossref","first-page":"303","DOI":"10.1093\/nar\/30.1.303","article-title":"DIP, the database of interacting proteins: a research tool for studying cellular networks of protein interactions","volume":"30","author":"Xenarios","year":"2002","journal-title":"Nucleic Acids Res"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/24\/12\/1465\/49046660\/bioinformatics_24_12_1465.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/24\/12\/1465\/49046660\/bioinformatics_24_12_1465.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,2]],"date-time":"2023-02-02T11:44:32Z","timestamp":1675338272000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/24\/12\/1465\/196224"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2008,4,28]]},"references-count":8,"journal-issue":{"issue":"12","published-print":{"date-parts":[[2008,6,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btn208","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2008,6,15]]},"published":{"date-parts":[[2008,4,28]]}}}