{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,3]],"date-time":"2026-02-03T21:47:20Z","timestamp":1770155240472,"version":"3.49.0"},"reference-count":9,"publisher":"Oxford University Press (OUP)","issue":"18","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":3003,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008,9,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Contact: \u00a0Javier.tamames@uv.es<\/jats:p>","DOI":"10.1093\/bioinformatics\/btn355","type":"journal-article","created":{"date-parts":[[2008,7,15]],"date-time":"2008-07-15T00:12:42Z","timestamp":1216080762000},"page":"2124-2125","source":"Crossref","is-referenced-by-count":37,"title":["Metagenomics reveals our incomplete knowledge of global diversity"],"prefix":"10.1093","volume":"24","author":[{"given":"Miguel","family":"Pignatelli","sequence":"first","affiliation":[{"name":"1 Instituto Cavanilles of Biodiversity and Evolutionary Biology, University of Valencia, Apdo 22085, 46071 Valencia, 2CIBER of Epidemiology and Public Health (CIBERESP) and 3Grid and High-performance Computing Group, ITACA, Politechnic University of Valencia, Camino de Vera s\/n, 46022 Valencia, Spain"},{"name":"1 Instituto Cavanilles of Biodiversity and Evolutionary Biology, University of Valencia, Apdo 22085, 46071 Valencia, 2CIBER of Epidemiology and Public Health (CIBERESP) and 3Grid and High-performance Computing Group, ITACA, Politechnic University of Valencia, Camino de Vera s\/n, 46022 Valencia, Spain"}]},{"given":"Gabriel","family":"Aparicio","sequence":"additional","affiliation":[{"name":"1 Instituto Cavanilles of Biodiversity and Evolutionary Biology, University of Valencia, Apdo 22085, 46071 Valencia, 2CIBER of Epidemiology and Public Health (CIBERESP) and 3Grid and High-performance Computing Group, ITACA, Politechnic University of Valencia, Camino de Vera s\/n, 46022 Valencia, Spain"}]},{"given":"Ignacio","family":"Blanquer","sequence":"additional","affiliation":[{"name":"1 Instituto Cavanilles of Biodiversity and Evolutionary Biology, University of Valencia, Apdo 22085, 46071 Valencia, 2CIBER of Epidemiology and Public Health (CIBERESP) and 3Grid and High-performance Computing Group, ITACA, Politechnic University of Valencia, Camino de Vera s\/n, 46022 Valencia, Spain"}]},{"given":"Vicente","family":"Hern\u00e1ndez","sequence":"additional","affiliation":[{"name":"1 Instituto Cavanilles of Biodiversity and Evolutionary Biology, University of Valencia, Apdo 22085, 46071 Valencia, 2CIBER of Epidemiology and Public Health (CIBERESP) and 3Grid and High-performance Computing Group, ITACA, Politechnic University of Valencia, Camino de Vera s\/n, 46022 Valencia, Spain"}]},{"given":"Andr\u00e9s","family":"Moya","sequence":"additional","affiliation":[{"name":"1 Instituto Cavanilles of Biodiversity and Evolutionary Biology, University of Valencia, Apdo 22085, 46071 Valencia, 2CIBER of Epidemiology and Public Health (CIBERESP) and 3Grid and High-performance Computing Group, ITACA, Politechnic University of Valencia, Camino de Vera s\/n, 46022 Valencia, Spain"},{"name":"1 Instituto Cavanilles of Biodiversity and Evolutionary Biology, University of Valencia, Apdo 22085, 46071 Valencia, 2CIBER of Epidemiology and Public Health (CIBERESP) and 3Grid and High-performance Computing Group, ITACA, Politechnic University of Valencia, Camino de Vera s\/n, 46022 Valencia, Spain"}]},{"given":"Javier","family":"Tamames","sequence":"additional","affiliation":[{"name":"1 Instituto Cavanilles of Biodiversity and Evolutionary Biology, University of Valencia, Apdo 22085, 46071 Valencia, 2CIBER of Epidemiology and Public Health (CIBERESP) and 3Grid and High-performance Computing Group, ITACA, Politechnic University of Valencia, Camino de Vera s\/n, 46022 Valencia, Spain"},{"name":"1 Instituto Cavanilles of Biodiversity and Evolutionary Biology, University of Valencia, Apdo 22085, 46071 Valencia, 2CIBER of Epidemiology and Public Health (CIBERESP) and 3Grid and High-performance Computing Group, ITACA, Politechnic University of Valencia, Camino de Vera s\/n, 46022 Valencia, Spain"}]}],"member":"286","published-online":{"date-parts":[[2008,7,13]]},"reference":[{"key":"2023020211121567800_B1","article-title":"A grid-enabled software architecture and implementation of parallel and sequential BLAST","volume-title":"Proceedings of the Spanish Conference on Science Grid Computing.","author":"Aparicio","year":"2007"},{"key":"2023020211121567800_B2","doi-asserted-by":"crossref","first-page":"1731","DOI":"10.1128\/AEM.65.4.1731-1737.1999","article-title":"Wide distribution and diversity of members of the bacterial kingdom Acidobacterium in the environment","volume":"65","author":"Barns","year":"1999","journal-title":"Appl. Environ. Microbiol."},{"key":"2023020211121567800_B3","doi-asserted-by":"crossref","first-page":"540","DOI":"10.1007\/s002390010184","article-title":"The closest BLAST hit is often not the nearest neighbor","volume":"52","author":"Koski","year":"2001","journal-title":"J. Mol. Evol."},{"key":"2023020211121567800_B4","doi-asserted-by":"crossref","first-page":"2230","DOI":"10.1093\/nar\/gkn038","article-title":"Phylogenetic classification of short environmental DNA fragments","volume":"36","author":"Krause","year":"2008","journal-title":"Nucleic Acids Res."},{"key":"2023020211121567800_B5","doi-asserted-by":"crossref","first-page":"495","DOI":"10.1038\/nmeth1043","article-title":"Use of simulated data sets to evaluate the fidelity of metagenomic processing methods","volume":"4","author":"Mavromatis","year":"2007","journal-title":"Nat. Methods"},{"key":"2023020211121567800_B6","doi-asserted-by":"crossref","first-page":"136","DOI":"10.1186\/1471-2164-9-136","article-title":"Estimating the extent of horizontal gene transfer in metagenomic sequences","volume":"9","author":"Tamames","year":"2008","journal-title":"BMC Genomics"},{"key":"2023020211121567800_B7","doi-asserted-by":"crossref","first-page":"554","DOI":"10.1126\/science.1107851","article-title":"Comparative metagenomics of microbial communities","volume":"308","author":"Tringe","year":"2005","journal-title":"Science"},{"key":"2023020211121567800_B8","doi-asserted-by":"crossref","first-page":"e1862","DOI":"10.1371\/journal.pone.0001862","article-title":"The airborne metagenome in an indoor urban environment","volume":"3","author":"Tringe","year":"2008","journal-title":"PLoS ONE"},{"key":"2023020211121567800_B9","doi-asserted-by":"crossref","first-page":"66","DOI":"10.1126\/science.1093857","article-title":"Environmental genome shotgun sequencing of the Sargasso Sea","volume":"11","author":"Venter","year":"2004","journal-title":"Science"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/24\/18\/2124\/49051833\/bioinformatics_24_18_2124.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/24\/18\/2124\/49051833\/bioinformatics_24_18_2124.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,2]],"date-time":"2023-02-02T13:53:10Z","timestamp":1675345990000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/24\/18\/2124\/190821"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2008,7,13]]},"references-count":9,"journal-issue":{"issue":"18","published-print":{"date-parts":[[2008,9,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btn355","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2008,9,15]]},"published":{"date-parts":[[2008,7,13]]}}}