{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,10,21]],"date-time":"2025-10-21T15:00:30Z","timestamp":1761058830057},"reference-count":7,"publisher":"Oxford University Press (OUP)","issue":"20","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008,10,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Estimating Phylogenies of Species (EPoS) is a modular software framework for phylogenetic analysis, visualization and data management. It provides a plugin-based system that integrates a storage facility, a rich user interface and the ability to easily incorporate new methods, functions and visualizations. EPoS ships with persistent data management, a set of well-known phylogenetic algorithms and a multitude of tree visualization methods and layouts. Implemented algorithms cover distance-based tree construction, consensus trees and various graph-based supertree methods. The rendering system can be customized for, say, different edge and node styles.<\/jats:p>\n               <jats:p>Availability: Executables and source code are available under the LGPL license at http:\/\/www.bio.informatik.uni-jena.de\/epos.<\/jats:p>\n               <jats:p>Contact: \u00a0thasso@minet.uni-jena.de<\/jats:p>\n               <jats:p>Supplementary information: The homepage contains tutorials and documentation for both users and programmers who want to develop plugins and extensions.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btn364","type":"journal-article","created":{"date-parts":[[2008,7,17]],"date-time":"2008-07-17T00:34:11Z","timestamp":1216254851000},"page":"2399-2400","source":"Crossref","is-referenced-by-count":39,"title":["EPoS: a modular software framework for phylogenetic analysis"],"prefix":"10.1093","volume":"24","author":[{"given":"Thasso","family":"Griebel","sequence":"first","affiliation":[{"name":"Faculty of Mathematics and Computer Science, Friedrich-Schiller-University Jena, 07743 Jena, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Malte","family":"Brinkmeyer","sequence":"additional","affiliation":[{"name":"Faculty of Mathematics and Computer Science, Friedrich-Schiller-University Jena, 07743 Jena, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Sebastian","family":"B\u00f6cker","sequence":"additional","affiliation":[{"name":"Faculty of Mathematics and Computer Science, Friedrich-Schiller-University Jena, 07743 Jena, Germany"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2008,7,16]]},"reference":[{"key":"2023020211253129000_B1","doi-asserted-by":"crossref","first-page":"405","DOI":"10.1137\/0210030","article-title":"Inferring a tree from lowest common ancestors with an application to the optimization of relational expressions","volume":"10","author":"Aho","year":"1981","journal-title":"SIAM J. Comput."},{"key":"2023020211253129000_B2","doi-asserted-by":"crossref","first-page":"270","DOI":"10.1080\/10635150500541649","article-title":"Fast computation of supertrees for compatible phylogenies with nested taxa","volume":"55","author":"Berry","year":"2006","journal-title":"Syst. Biol."},{"key":"2023020211253129000_B3","first-page":"129","volume-title":"Supertree methods for ancestral divergence dates and other applications","author":"Bryant","year":"2004"},{"key":"2023020211253129000_B4","doi-asserted-by":"crossref","first-page":"453","DOI":"10.1145\/882262.882291","article-title":"Treejuxtaposer: scalable tree comparison using focus+context with guaranteed visibility","volume":"22","author":"Munzner","year":"2003","journal-title":"ACM Trans. Graph."},{"key":"2023020211253129000_B5","doi-asserted-by":"crossref","first-page":"537","DOI":"10.1007\/3-540-45784-4_41","article-title":"Modified mincut supertrees","volume-title":"Proceedings of Workshop on Algorithms in Bioinformatics (WABI 2002)","author":"Page","year":"2002"},{"key":"2023020211253129000_B6","first-page":"406","article-title":"The neighbor-joining method: a new method for reconstructing phylogenetic trees","volume":"4","author":"Saitou","year":"1987","journal-title":"Mol. Biol. Evol."},{"key":"2023020211253129000_B7","doi-asserted-by":"crossref","first-page":"147","DOI":"10.1016\/S0166-218X(00)00202-X","article-title":"A supertree method for rooted trees","volume":"105","author":"Semple","year":"2000","journal-title":"Discrete Appl. Math."}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/24\/20\/2399\/49051140\/bioinformatics_24_20_2399.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/24\/20\/2399\/49051140\/bioinformatics_24_20_2399.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,2]],"date-time":"2023-02-02T11:27:52Z","timestamp":1675337272000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/24\/20\/2399\/257827"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2008,7,16]]},"references-count":7,"journal-issue":{"issue":"20","published-print":{"date-parts":[[2008,10,15]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btn364","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2008,10,15]]},"published":{"date-parts":[[2008,7,16]]}}}