{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,3,12]],"date-time":"2026-03-12T00:26:41Z","timestamp":1773275201303,"version":"3.50.1"},"reference-count":11,"publisher":"Oxford University Press (OUP)","issue":"19","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008,10,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: We present GIMSAN (GIbbsMarkov with Significance ANalysis): a novel tool for de novo motif finding. GIMSAN combines GibbsMarkov, our variant of the Gibbs Sampler, described here for the first time, with our recently introduced significance analysis.<\/jats:p>\n               <jats:p>Availability: GIMSAN is currently available as a web application and a stand-alone application on Unix and PBS (Portable Batch System) cluster through links from http:\/\/www.cs.cornell.edu\/~keich.<\/jats:p>\n               <jats:p>Contact: \u00a0keich@cs.cornell.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/btn408","type":"journal-article","created":{"date-parts":[[2008,8,15]],"date-time":"2008-08-15T00:45:25Z","timestamp":1218761125000},"page":"2256-2257","source":"Crossref","is-referenced-by-count":26,"title":["GIMSAN: a Gibbs motif finder with significance analysis"],"prefix":"10.1093","volume":"24","author":[{"given":"Patrick","family":"Ng","sequence":"first","affiliation":[{"name":"Department of Computer Science, Cornell University, Ithaca, NY 14853, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Uri","family":"Keich","sequence":"additional","affiliation":[{"name":"Department of Computer Science, Cornell University, Ithaca, NY 14853, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2008,8,14]]},"reference":[{"key":"2023020211251226700_B1","first-page":"21","article-title":"The value of prior knowledge in discovering motifs with meme","volume-title":"Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology.","author":"Bailey","year":"1995"},{"key":"2023020211251226700_B2","article-title":"Weblogo: a sequence logo generator","author":"Crooks","year":"2004"},{"key":"2023020211251226700_B3","doi-asserted-by":"crossref","first-page":"99","DOI":"10.1038\/nature02800","article-title":"Transcriptional regulatory code of a eukaryotic genome","volume":"431","author":"Harbison","year":"2004","journal-title":"Nature"},{"key":"2023020211251226700_B4","doi-asserted-by":"crossref","first-page":"188","DOI":"10.1214\/088342304000000107","article-title":"Computational discovery of gene regulatory binding motifs: a Bayesian perspective","volume":"19","author":"Jensen","year":"2004","journal-title":"Stat. 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