{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,9,28]],"date-time":"2025-09-28T15:29:40Z","timestamp":1759073380880},"reference-count":8,"publisher":"Oxford University Press (OUP)","issue":"21","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008,11,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: An important contribution to the Gene Ontology (GO) project is to develop tools that facilitate the creation, maintenance and use of ontologies. Several tools have been created for communicating and using the GO project. However, a limitation with most of these tools is that they suffer from lack of a comprehensive search facility. We developed a web application, GOfetcher, with a very comprehensive search facility for the GO project and a variety of output formats for the results. GOfetcher has three different levels for searching the GO: \u2018Quick Search\u2019, \u2018Advanced Search\u2019 and \u2018Upload Files\u2019 for searching. The application includes a unique search option which generates gene information given a nucleotide or protein accession number which can then be used in generating GO information. The output data in GOfetcher can be saved into several different formats; including spreadsheet, comma-separated values and the extensible markup language (XML) format. The database is available at http:\/\/mcbc.usm.edu\/gofetcher\/.<\/jats:p>\n               <jats:p>Contact: \u00a0youping.deng@usm.edu or mehdi.pirooznia@usm.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/btn441","type":"journal-article","created":{"date-parts":[[2008,8,27]],"date-time":"2008-08-27T00:13:34Z","timestamp":1219796014000},"page":"2561-2563","source":"Crossref","is-referenced-by-count":9,"title":["GOfetcher: a database with complex searching facility for gene ontology"],"prefix":"10.1093","volume":"24","author":[{"given":"Mehdi","family":"Pirooznia","sequence":"first","affiliation":[{"name":"1 Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS 39406 and 2Environmental Laboratory, U.S. Army Engineer Research and Development Center, Vicksburg, MS 39180, USA"}]},{"given":"Tanwir","family":"Habib","sequence":"additional","affiliation":[{"name":"1 Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS 39406 and 2Environmental Laboratory, U.S. Army Engineer Research and Development Center, Vicksburg, MS 39180, USA"}]},{"given":"Edward J.","family":"Perkins","sequence":"additional","affiliation":[{"name":"1 Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS 39406 and 2Environmental Laboratory, U.S. Army Engineer Research and Development Center, Vicksburg, MS 39180, USA"}]},{"given":"Youping","family":"Deng","sequence":"additional","affiliation":[{"name":"1 Department of Biological Sciences, University of Southern Mississippi, Hattiesburg, MS 39406 and 2Environmental Laboratory, U.S. Army Engineer Research and Development Center, Vicksburg, MS 39180, USA"}]}],"member":"286","published-online":{"date-parts":[[2008,8,26]]},"reference":[{"key":"2023020211382725600_B1","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1038\/75556","article-title":"Gene ontology: tool for the unification of biology. The gene ontology consortium","volume":"25","author":"Ashburner","year":"2000","journal-title":"Nat. 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Biol."},{"key":"2023020211382725600_B8","doi-asserted-by":"crossref","first-page":"D612","DOI":"10.1093\/nar\/gkm975","article-title":"WormBase 2007","volume":"36","author":"Rogers","year":"2008","journal-title":"Nucleic Acids Res."}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/24\/21\/2561\/49055625\/bioinformatics_24_21_2561.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/24\/21\/2561\/49055625\/bioinformatics_24_21_2561.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,2]],"date-time":"2023-02-02T14:42:03Z","timestamp":1675348923000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/24\/21\/2561\/191182"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2008,8,26]]},"references-count":8,"journal-issue":{"issue":"21","published-print":{"date-parts":[[2008,11,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btn441","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2008,11,1]]},"published":{"date-parts":[[2008,8,26]]}}}