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A key feature here is the ability to search for CNEs that may be relevant to tissue-specific gene regulation, based on known developmental expression patterns of nearby genes. cneViewer provides this and other organizing features that significantly facilitate experimental design and CNE analysis.<\/jats:p>\n               <jats:p>Availability: \u00a0http:\/\/cneviewer.zebrafishcne.org<\/jats:p>\n               <jats:p>Contact: \u00a0chuangj@bc.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/btn443","type":"journal-article","created":{"date-parts":[[2008,8,22]],"date-time":"2008-08-22T00:33:56Z","timestamp":1219365236000},"page":"2418-2419","source":"Crossref","is-referenced-by-count":16,"title":["cneViewer: a database of conserved non-coding elements for studies of tissue-specific gene regulation"],"prefix":"10.1093","volume":"24","author":[{"given":"Jason","family":"Persampieri","sequence":"first","affiliation":[{"name":"1 Department of Biology, Boston College, Chestnut Hill, MA 02467, 2Department of Genetics, Harvard Medical School, Boston, MA 02115 and 3Department of Biopharmaceutical Sciences and Center for Human Genetics, University of California, San Francisco, CA 94143, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Deborah I.","family":"Ritter","sequence":"additional","affiliation":[{"name":"1 Department of Biology, Boston College, Chestnut Hill, MA 02467, 2Department of Genetics, Harvard Medical School, Boston, MA 02115 and 3Department of Biopharmaceutical Sciences and Center for Human Genetics, University of California, San Francisco, CA 94143, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Daniel","family":"Lees","sequence":"additional","affiliation":[{"name":"1 Department of Biology, Boston College, Chestnut Hill, MA 02467, 2Department of Genetics, Harvard Medical School, Boston, MA 02115 and 3Department of Biopharmaceutical Sciences and Center for Human Genetics, University of California, San Francisco, CA 94143, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jessica","family":"Lehoczky","sequence":"additional","affiliation":[{"name":"1 Department of Biology, Boston College, Chestnut Hill, MA 02467, 2Department of Genetics, Harvard Medical School, Boston, MA 02115 and 3Department of Biopharmaceutical Sciences and Center for Human Genetics, University of California, San Francisco, CA 94143, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Qiang","family":"Li","sequence":"additional","affiliation":[{"name":"1 Department of Biology, Boston College, Chestnut Hill, MA 02467, 2Department of Genetics, Harvard Medical School, Boston, MA 02115 and 3Department of Biopharmaceutical Sciences and Center for Human Genetics, University of California, San Francisco, CA 94143, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Su","family":"Guo","sequence":"additional","affiliation":[{"name":"1 Department of Biology, Boston College, Chestnut Hill, MA 02467, 2Department of Genetics, Harvard Medical School, Boston, MA 02115 and 3Department of Biopharmaceutical Sciences and Center for Human Genetics, University of California, San Francisco, CA 94143, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jeffrey H.","family":"Chuang","sequence":"additional","affiliation":[{"name":"1 Department of Biology, Boston College, Chestnut Hill, MA 02467, 2Department of Genetics, Harvard Medical School, Boston, MA 02115 and 3Department of Biopharmaceutical Sciences and Center for Human Genetics, University of California, San Francisco, CA 94143, USA"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2008,8,20]]},"reference":[{"key":"2023020211253057100_B1","doi-asserted-by":"crossref","first-page":"R34","DOI":"10.1186\/gb-2008-9-2-r34","article-title":"Ancora: a web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes","volume":"9","author":"Engstrom","year":"2008","journal-title":"Genome Biol."},{"issue":"Suppl. 2","key":"2023020211253057100_B2","doi-asserted-by":"crossref","first-page":"W280","DOI":"10.1093\/nar\/gkh355","article-title":"ECR browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes","volume":"32","author":"Ovcharenko","year":"2004","journal-title":"Nucleic Acids Res."},{"issue":"Suppl. 1","key":"2023020211253057100_B3","doi-asserted-by":"crossref","first-page":"D581","DOI":"10.1093\/nar\/gkj086","article-title":"The Zebrafish information network: the zebrafish model organism database","volume":"34","author":"Sprague","year":"2006","journal-title":"Nucleic Acids Res."},{"key":"2023020211253057100_B4","doi-asserted-by":"crossref","first-page":"140","DOI":"10.1016\/j.semcdb.2006.12.014","article-title":"Enhancer identification through comparative genomics","volume":"18","author":"Visel","year":"2007","journal-title":"Semin. Cell Dev. Biol."},{"issue":"Suppl. 1","key":"2023020211253057100_B5","doi-asserted-by":"crossref","first-page":"D88","DOI":"10.1093\/nar\/gkl822","article-title":"VISTA enhancer browser\u2014a database of tissue-specific human enhancers","volume":"35","author":"Visel","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"2023020211253057100_B6","doi-asserted-by":"crossref","first-page":"100","DOI":"10.1186\/1471-213X-7-100","article-title":"CONDOR: a database resource of developmentally associated conserved non-coding elements","volume":"7","author":"Woolfe","year":"2007","journal-title":"BMC Dev. 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