{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,2,20]],"date-time":"2026-02-20T02:26:29Z","timestamp":1771554389390,"version":"3.50.1"},"reference-count":5,"publisher":"Oxford University Press (OUP)","issue":"21","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2944,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2008,11,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Tag sequencing using high-throughput sequencing technologies are now regularly employed to identify specific sequence features, such as transcription factor binding sites (ChIP-seq) or regions of open chromatin (DNase-seq). To intuitively summarize and display individual sequence data as an accurate and interpretable signal, we developed F-Seq, a software package that generates a continuous tag sequence density estimation allowing identification of biologically meaningful sites whose output can be displayed directly in the UCSC Genome Browser.<\/jats:p>\n               <jats:p>Availability: The software is written in the Java language and is available on all major computing platforms for download at http:\/\/www.genome.duke.edu\/labs\/furey\/software\/fseq.<\/jats:p>\n               <jats:p>Contact: \u00a0terry.furey@duke.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/btn480","type":"journal-article","created":{"date-parts":[[2008,9,11]],"date-time":"2008-09-11T00:25:16Z","timestamp":1221092716000},"page":"2537-2538","source":"Crossref","is-referenced-by-count":326,"title":["F-Seq: a feature density estimator for high-throughput sequence tags"],"prefix":"10.1093","volume":"24","author":[{"given":"Alan P.","family":"Boyle","sequence":"first","affiliation":[{"name":"Institute for Genome Sciences and Policy, Duke University, Durham, NC 27708, USA"}]},{"given":"Justin","family":"Guinney","sequence":"additional","affiliation":[{"name":"Institute for Genome Sciences and Policy, Duke University, Durham, NC 27708, USA"}]},{"given":"Gregory E.","family":"Crawford","sequence":"additional","affiliation":[{"name":"Institute for Genome Sciences and Policy, Duke University, Durham, NC 27708, USA"}]},{"given":"Terrence S.","family":"Furey","sequence":"additional","affiliation":[{"name":"Institute for Genome Sciences and Policy, Duke University, Durham, NC 27708, USA"}]}],"member":"286","published-online":{"date-parts":[[2008,9,10]]},"reference":[{"key":"2023020211365622800_B1","doi-asserted-by":"crossref","first-page":"311","DOI":"10.1016\/j.cell.2007.12.014","article-title":"High-resolution mapping and characterization of open chromatin across the genome","volume":"132","author":"Boyle","year":"2008","journal-title":"Cell"},{"key":"2023020211365622800_B2","doi-asserted-by":"crossref","first-page":"1497","DOI":"10.1126\/science.1141319","article-title":"Genome-wide mapping of in vivo protein-DNA interactions","volume":"316","author":"Johnson","year":"2007","journal-title":"Science"},{"key":"2023020211365622800_B3","doi-asserted-by":"crossref","first-page":"996","DOI":"10.1101\/gr.229102","article-title":"The human genome browser at UCSC","volume":"12","author":"Kent","year":"2002","journal-title":"Genome Res."},{"key":"2023020211365622800_B4","doi-asserted-by":"crossref","first-page":"1065","DOI":"10.1214\/aoms\/1177704472","article-title":"On the estimation of a probability density function and mode","volume":"33","author":"Parzen","year":"1962","journal-title":"Ann. 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Methods"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/24\/21\/2537\/49055099\/bioinformatics_24_21_2537.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/24\/21\/2537\/49055099\/bioinformatics_24_21_2537.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,2,2]],"date-time":"2023-02-02T11:37:10Z","timestamp":1675337830000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/24\/21\/2537\/192643"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2008,9,10]]},"references-count":5,"journal-issue":{"issue":"21","published-print":{"date-parts":[[2008,11,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btn480","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2008,11,1]]},"published":{"date-parts":[[2008,9,10]]}}}