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CARPET allows rapid experimental data entry, simple quality control, normalization, easy identification and annotation of enriched ChIP-chip regions, detection of the absolute or relative transcriptional status of genes assessed by expression tiling experiments and, more importantly, it allows the integration of ChIP-chip and expression data. Results can be visualized instantly in a genomic context within the UCSC genome browser as graph-based custom tracks through Galaxy2. All generated and uploaded data can be stored within sessions and are easily shared with other users.<\/jats:p><jats:p>Availability: \u00a0http:\/\/bio.ifom-ieo-campus.it\/galaxy<\/jats:p><jats:p>Contacts: \u00a0matteo.cesaroni@ifom-ieo-campus.it; lucilla.luzi@ifom-ieo-campus.it<\/jats:p>","DOI":"10.1093\/bioinformatics\/btn542","type":"journal-article","created":{"date-parts":[[2008,10,23]],"date-time":"2008-10-23T00:13:26Z","timestamp":1224720806000},"page":"2918-2920","source":"Crossref","is-referenced-by-count":23,"title":["CARPET: a web-based package for the analysis of ChIP-chip and expression tiling data"],"prefix":"10.1093","volume":"24","author":[{"given":"Matteo","family":"Cesaroni","sequence":"first","affiliation":[{"name":"1 Department of Experimental Oncology, European Institute of Oncology, Via Ripamonti 435, 20141 Milano, 2Cogentech, Consortium for Genomic Technologies, Via Adamello 16, 20139 Milano and 3IFOM, FIRC Institute of Molecular Oncology Foundation, Via Adamello 16, 20139 Milano, Italy"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Davide","family":"Cittaro","sequence":"additional","affiliation":[{"name":"1 Department of Experimental Oncology, European Institute of Oncology, Via Ripamonti 435, 20141 Milano, 2Cogentech, Consortium for Genomic Technologies, Via Adamello 16, 20139 Milano and 3IFOM, FIRC Institute of Molecular Oncology Foundation, Via Adamello 16, 20139 Milano, Italy"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Alessandro","family":"Brozzi","sequence":"additional","affiliation":[{"name":"1 Department of Experimental Oncology, European Institute of Oncology, Via Ripamonti 435, 20141 Milano, 2Cogentech, Consortium for Genomic Technologies, Via Adamello 16, 20139 Milano and 3IFOM, FIRC Institute of Molecular Oncology Foundation, Via Adamello 16, 20139 Milano, Italy"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Pier Giuseppe","family":"Pelicci","sequence":"additional","affiliation":[{"name":"1 Department of Experimental Oncology, European Institute of Oncology, Via Ripamonti 435, 20141 Milano, 2Cogentech, Consortium for Genomic Technologies, Via Adamello 16, 20139 Milano and 3IFOM, FIRC Institute of Molecular Oncology Foundation, Via Adamello 16, 20139 Milano, Italy"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Lucilla","family":"Luzi","sequence":"additional","affiliation":[{"name":"1 Department of Experimental Oncology, European Institute of Oncology, Via Ripamonti 435, 20141 Milano, 2Cogentech, Consortium for Genomic Technologies, Via Adamello 16, 20139 Milano and 3IFOM, FIRC Institute of Molecular Oncology Foundation, Via Adamello 16, 20139 Milano, Italy"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2008,10,21]]},"reference":[{"key":"2023020212295608200_B1","doi-asserted-by":"crossref","first-page":"289","DOI":"10.1111\/j.2517-6161.1995.tb02031.x","article-title":"Controlling the false discovery rate - a practical and powerful approach to multiple testing","volume":"57","author":"Benjamini","year":"1995","journal-title":"J. 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