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It is written for the Mesquite software system and provides sampling procedures to incorporate uncertainty in gene tree reconstruction while providing confidence estimates for inferred species trees.<\/jats:p>\n               <jats:p>Availability: \u00a0http:\/\/www.lycaenid.org\/augist\/<\/jats:p>\n               <jats:p>Contact: \u00a0jeffrey.oliver@yale.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/btn556","type":"journal-article","created":{"date-parts":[[2008,10,26]],"date-time":"2008-10-26T00:14:13Z","timestamp":1224980053000},"page":"2932-2933","source":"Crossref","is-referenced-by-count":19,"title":["AUGIST: inferring species trees while accommodating gene tree uncertainty"],"prefix":"10.1093","volume":"24","author":[{"given":"Jeffrey C.","family":"Oliver","sequence":"first","affiliation":[{"name":"1 Interdisciplinary Program in Insect Science, University of Arizona, Tucson, AZ 85721 and 2Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06511, USA"},{"name":"1 Interdisciplinary Program in Insect Science, University of Arizona, Tucson, AZ 85721 and 2Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06511, USA"}]}],"member":"286","published-online":{"date-parts":[[2008,10,25]]},"reference":[{"key":"2023020212295305000_B1","doi-asserted-by":"crossref","first-page":"363","DOI":"10.1534\/genetics.107.076422","article-title":"Integrating phylogenetic and population genetic analyses of multiple loci to test species divergence hypotheses inPasserinabuntings","volume":"178","author":"Carling","year":"2008","journal-title":"Genetics"},{"key":"2023020212295305000_B2","doi-asserted-by":"crossref","first-page":"400","DOI":"10.1080\/10635150701405560","article-title":"Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: and example fromMelanoplusgrasshoppers","volume":"56","author":"Carstens","year":"2007","journal-title":"Syst. 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