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The server is flexible, in that it allows users to analyse individual protein associations or large datasets of associations deposited in the PDB, or upload and analyse proprietary files. The properties calculated can be compared with parameter distributions for non-homologous datasets of different classes of protein associations provided on the server website. The server provides an efficient way of characterizing protein\u2013protein associations of new or existing proteins, and a means of putting these values in the context of previously observed associations.<\/jats:p>\n               <jats:p>Availability: \u00a0http:\/\/www.bioinformatics.sussex.ac.uk\/protorp<\/jats:p>\n               <jats:p>Contact: \u00a0s.jones@sussex.ac.uk<\/jats:p>","DOI":"10.1093\/bioinformatics\/btn584","type":"journal-article","created":{"date-parts":[[2008,11,12]],"date-time":"2008-11-12T01:25:25Z","timestamp":1226453125000},"page":"413-414","source":"Crossref","is-referenced-by-count":162,"title":["ProtorP: a protein\u2013protein interaction analysis server"],"prefix":"10.1093","volume":"25","author":[{"given":"Christopher","family":"Reynolds","sequence":"first","affiliation":[{"name":"Department of Biochemistry, School of Life Sciences, John Maynard Smith Building, University of Sussex, Falmer, Brighton BN1 9QG, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"David","family":"Damerell","sequence":"additional","affiliation":[{"name":"Department of Biochemistry, School of Life Sciences, John Maynard Smith Building, University of Sussex, Falmer, Brighton BN1 9QG, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Susan","family":"Jones","sequence":"additional","affiliation":[{"name":"Department of Biochemistry, School of Life Sciences, John Maynard Smith Building, University of Sussex, Falmer, Brighton BN1 9QG, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2008,11,11]]},"reference":[{"key":"2023013109593827300_B1","doi-asserted-by":"crossref","first-page":"235","DOI":"10.1093\/nar\/28.1.235","article-title":"\u2018The Protein Data Bank\u2019","volume":"28","author":"Berman","year":"2000","journal-title":"Nucleic Acids Res"},{"key":"2023013109593827300_B2","doi-asserted-by":"crossref","first-page":"353","DOI":"10.1002\/prot.20433","article-title":"Statistical analysis and prediction of protein-protein interfaces","volume":"60","author":"Bordner","year":"2005","journal-title":"Proteins Struc. 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