{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2024,5,13]],"date-time":"2024-05-13T02:33:53Z","timestamp":1715567633906},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"5","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2807,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2009,3,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: We present a tool designed for visualization of large-scale genetic and genomic data exemplified by results from genome-wide association studies. This software provides an integrated framework to facilitate the interpretation of SNP association studies in genomic context. Gene annotations can be retrieved from Ensembl, linkage disequilibrium data downloaded from HapMap and custom data imported in BED or WIG format. AssociationViewer integrates functionalities that enable the aggregation or intersection of data tracks. It implements an efficient cache system and allows the display of several, very large-scale genomic datasets.<\/jats:p>\n               <jats:p>Availability: The Java code for AssociationViewer is distributed under the GNU General Public Licence and has been tested on Microsoft Windows XP, MacOSX and GNU\/Linux operating systems. It is available from the SourceForge repository. This also includes Java webstart, documentation and example datafiles.<\/jats:p>\n               <jats:p>Contact: \u00a0brian.stevenson@licr.org<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at http:\/\/sourceforge.net\/projects\/associationview\/ online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btp017","type":"journal-article","created":{"date-parts":[[2009,1,26]],"date-time":"2009-01-26T01:13:06Z","timestamp":1232932386000},"page":"662-663","source":"Crossref","is-referenced-by-count":2,"title":["AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context"],"prefix":"10.1093","volume":"25","author":[{"given":"Olivier","family":"Martin","sequence":"first","affiliation":[{"name":"1 Swiss Institute of Bioinformatics, 2Ludwig Institute for Cancer Research, 1015 Lausanne and 3Institute of Microbiology, University Hospital, University of Lausanne, 1011 Lausanne, Switzerland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Armand","family":"Valsesia","sequence":"additional","affiliation":[{"name":"1 Swiss Institute of Bioinformatics, 2Ludwig Institute for Cancer Research, 1015 Lausanne and 3Institute of Microbiology, University Hospital, University of Lausanne, 1011 Lausanne, Switzerland"},{"name":"1 Swiss Institute of Bioinformatics, 2Ludwig Institute for Cancer Research, 1015 Lausanne and 3Institute of Microbiology, University Hospital, University of Lausanne, 1011 Lausanne, Switzerland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Amalio","family":"Telenti","sequence":"additional","affiliation":[{"name":"1 Swiss Institute of Bioinformatics, 2Ludwig Institute for Cancer Research, 1015 Lausanne and 3Institute of Microbiology, University Hospital, University of Lausanne, 1011 Lausanne, Switzerland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Ioannis","family":"Xenarios","sequence":"additional","affiliation":[{"name":"1 Swiss Institute of Bioinformatics, 2Ludwig Institute for Cancer Research, 1015 Lausanne and 3Institute of Microbiology, University Hospital, University of Lausanne, 1011 Lausanne, Switzerland"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Brian J.","family":"Stevenson","sequence":"additional","affiliation":[{"name":"1 Swiss Institute of Bioinformatics, 2Ludwig Institute for Cancer Research, 1015 Lausanne and 3Institute of Microbiology, University Hospital, University of Lausanne, 1011 Lausanne, Switzerland"},{"name":"1 Swiss Institute of Bioinformatics, 2Ludwig Institute for Cancer Research, 1015 Lausanne and 3Institute of Microbiology, University Hospital, University of Lausanne, 1011 Lausanne, Switzerland"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2009,1,25]]},"reference":[{"key":"2023013110111172400_B1","doi-asserted-by":"crossref","first-page":"W21","DOI":"10.1093\/nar\/gkm298","article-title":"iHOP Web services","volume":"35","author":"Fern\u00e1ndez","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"2023013110111172400_B2","doi-asserted-by":"crossref","first-page":"640","DOI":"10.1101\/gr.071571.107","article-title":"WGAViewer: software for genomic annotation of whole genome association studies","volume":"18","author":"Ge","year":"2008","journal-title":"Genome Res."},{"key":"2023013110111172400_B3","doi-asserted-by":"crossref","first-page":"D610","DOI":"10.1093\/nar\/gkl996","article-title":"Ensembl 2007","volume":"35","author":"Hubbard","year":"2007","journal-title":"Nucleic Acids Res."},{"key":"2023013110111172400_B4","doi-asserted-by":"crossref","first-page":"949","DOI":"10.1038\/ng1416","article-title":"Detection of large-scale variation in the human genome","volume":"36","author":"Iafrate","year":"2004","journal-title":"Nat. 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