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Jalview 2 is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server.<\/jats:p><jats:p>Availability: The Jalview 2 Desktop application and JalviewLite applet are made freely available under the GPL, and can be downloaded from www.jalview.org<\/jats:p><jats:p>Contact: \u00a0g.j.barton@dundee.ac.uk<\/jats:p>","DOI":"10.1093\/bioinformatics\/btp033","type":"journal-article","created":{"date-parts":[[2009,1,17]],"date-time":"2009-01-17T01:50:48Z","timestamp":1232157048000},"page":"1189-1191","source":"Crossref","is-referenced-by-count":9674,"title":["Jalview Version 2\u2014a multiple sequence alignment editor and analysis workbench"],"prefix":"10.1093","volume":"25","author":[{"given":"Andrew M.","family":"Waterhouse","sequence":"first","affiliation":[{"name":"1 School of Life Sciences Research, College of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK and 2Broad Institute, 7 Cambridge Center, Cambridge, MA 02142, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"James B.","family":"Procter","sequence":"additional","affiliation":[{"name":"1 School of Life Sciences Research, College of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK and 2Broad Institute, 7 Cambridge Center, Cambridge, MA 02142, USA"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"David M. 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