{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,7,24]],"date-time":"2026-07-24T04:51:17Z","timestamp":1784868677837,"version":"3.55.0"},"reference-count":6,"publisher":"Oxford University Press (OUP)","issue":"10","content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2009,5,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Motivation: The large number of sequenced genomes required the development of software that reconstructs the consensus sequences of transposons and other repetitive elements. However, the available tools usually focus on the accurate identification of raw repeats and provide no information about the taxonomic position of the reconstructed consensi. TEclass is a tool to classify unknown transposable elements into their four main functional categories, which reflect their mode of transposition: DNA transposons, long terminal repeats (LTRs), long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs). TEclass uses machine learning support vector machine (SVM) for classification based on oligomer frequencies. It achieves 90\u201397% accuracy in the classification of novel DNA and LTR repeats, and 75% for LINEs and SINEs.<\/jats:p>\n               <jats:p>Availability: \u00a0http:\/\/www.compgen.uni-muenster.de\/teclass, stand alone program upon request.<\/jats:p>\n               <jats:p>Contact: \u00a0abrusan@uni-muenster.de<\/jats:p>","DOI":"10.1093\/bioinformatics\/btp084","type":"journal-article","created":{"date-parts":[[2009,4,7]],"date-time":"2009-04-07T00:13:22Z","timestamp":1239063202000},"page":"1329-1330","source":"Crossref","is-referenced-by-count":347,"title":["TEclass\u2014a tool for automated classification of unknown eukaryotic transposable elements"],"prefix":"10.1093","volume":"25","author":[{"given":"Gy\u00f6rgy","family":"Abrus\u00e1n","sequence":"first","affiliation":[{"name":"1 Katholieke Universiteit Leuven, Department of Biology, Laboratory of Aquatic Ecology and Evolutionary Biology, Ch. Deberiotstraat 32, 3000 Leuven, Belgium and 2University of M\u00fcnster, Faculty of Medicine, Institute of Bioinformatics, Von-Esmarch-Str. 54, D-48149 M\u00fcnster, Germany"},{"name":"1 Katholieke Universiteit Leuven, Department of Biology, Laboratory of Aquatic Ecology and Evolutionary Biology, Ch. Deberiotstraat 32, 3000 Leuven, Belgium and 2University of M\u00fcnster, Faculty of Medicine, Institute of Bioinformatics, Von-Esmarch-Str. 54, D-48149 M\u00fcnster, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Norbert","family":"Grundmann","sequence":"additional","affiliation":[{"name":"1 Katholieke Universiteit Leuven, Department of Biology, Laboratory of Aquatic Ecology and Evolutionary Biology, Ch. Deberiotstraat 32, 3000 Leuven, Belgium and 2University of M\u00fcnster, Faculty of Medicine, Institute of Bioinformatics, Von-Esmarch-Str. 54, D-48149 M\u00fcnster, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Luc","family":"DeMester","sequence":"additional","affiliation":[{"name":"1 Katholieke Universiteit Leuven, Department of Biology, Laboratory of Aquatic Ecology and Evolutionary Biology, Ch. Deberiotstraat 32, 3000 Leuven, Belgium and 2University of M\u00fcnster, Faculty of Medicine, Institute of Bioinformatics, Von-Esmarch-Str. 54, D-48149 M\u00fcnster, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]},{"given":"Wojciech","family":"Makalowski","sequence":"additional","affiliation":[{"name":"1 Katholieke Universiteit Leuven, Department of Biology, Laboratory of Aquatic Ecology and Evolutionary Biology, Ch. Deberiotstraat 32, 3000 Leuven, Belgium and 2University of M\u00fcnster, Faculty of Medicine, Institute of Bioinformatics, Von-Esmarch-Str. 54, D-48149 M\u00fcnster, Germany"}],"role":[{"vocabulary":"crossref","role":"author"}]}],"member":"286","published-online":{"date-parts":[[2009,4,5]]},"reference":[{"key":"2023013110283649000_B1","doi-asserted-by":"crossref","first-page":"94","DOI":"10.1186\/1471-2105-5-94","article-title":"Detection of transposable elements by their compositional bias","volume":"5","author":"Andrieu","year":"2004","journal-title":"BMC Bioinformatics"},{"key":"2023013110283649000_B2","doi-asserted-by":"crossref","first-page":"1269","DOI":"10.1101\/gr.88502","article-title":"Automated de novo identification of repeat sequence families in sequenced genomes","volume":"12","author":"Bao","year":"2002","journal-title":"Genome Res."},{"key":"2023013110283649000_B3","author":"Chang","year":"2001","journal-title":"LIBSVM: a library for support vector machines (version 2.86, 2008)."},{"key":"2023013110283649000_B4","doi-asserted-by":"crossref","first-page":"462","DOI":"10.1159\/000084979","article-title":"Repbase update, a database of eukaryotic repetitive elements","volume":"110","author":"Jurka","year":"2005","journal-title":"Cytogenet. 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