{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,3,19]],"date-time":"2025-03-19T15:57:05Z","timestamp":1742399825111},"reference-count":10,"publisher":"Oxford University Press (OUP)","issue":"7","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2781,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2009,4,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: Genome evolution underpins all of biology, yet its principles can be difficult to communicate to the non-specialist. To facilitate broader understanding of genome evolution, we have designed an interactive 3D environment that enables visualization of diverse genome evolution processes. The system can intuitively and interactively animate mutation histories involving genome rearrangement, point mutation, recombination, insertion and deletion. Multiple organisms related by a phylogeny can be visualized simultaneously. As methods to infer evolutionary histories of genomes become increasingly complex, visualization of the evolutionary process will not only be useful for communication, but will also serve as an exploratory tool for discovering new patterns of genome evolution.<\/jats:p>\n               <jats:p>Availability: The software is licensed under the GNU GPL and available for download from http:\/\/seevolution.org.<\/jats:p>\n               <jats:p>Contact: \u00a0aarondarling@ucdavis.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/btp096","type":"journal-article","created":{"date-parts":[[2009,2,22]],"date-time":"2009-02-22T03:48:44Z","timestamp":1235274524000},"page":"960-961","source":"Crossref","is-referenced-by-count":5,"title":["Seevolution: visualizing chromosome evolution"],"prefix":"10.1093","volume":"25","author":[{"given":"Andr\u00e9s","family":"Esteban-Marcos","sequence":"first","affiliation":[{"name":"Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Aaron E.","family":"Darling","sequence":"additional","affiliation":[{"name":"Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mark A.","family":"Ragan","sequence":"additional","affiliation":[{"name":"Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD 4072, Australia"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2009,2,20]]},"reference":[{"key":"2023013110164385200_B1","first-page":"171","volume-title":"Computational Reconstruction of Ancestral DNA Sequences. 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Biol. Evol."},{"issue":"Suppl. 2","key":"2023013110164385200_B7","doi-asserted-by":"crossref","first-page":"ii130","DOI":"10.1093\/bioinformatics\/btg1070","article-title":"MCMC genome rearrangement","volume":"19","author":"Mikl\u00f3s","year":"2003","journal-title":"Bioinformatics"},{"issue":"Suppl. 1","key":"2023013110164385200_B8","doi-asserted-by":"crossref","first-page":"i305","DOI":"10.1093\/bioinformatics\/btg1042","article-title":"Scaling up accurate phylogenetic reconstruction from gene-order data","volume":"19","author":"Tang","year":"2003","journal-title":"Bioinformatics"},{"key":"2023013110164385200_B9","doi-asserted-by":"crossref","first-page":"492","DOI":"10.1093\/bioinformatics\/18.3.492","article-title":"GRIMM: genome rearrangements web server","volume":"18","author":"Tesler","year":"2002","journal-title":"Boinformatics"},{"key":"2023013110164385200_B10","first-page":"29","volume-title":"Reconstructing the Evolutionary History of Complex Human Gene Clusters. LNCS 4955","author":"Zhang","year":"2008"}],"container-title":["Bioinformatics"],"original-title":[],"language":"en","link":[{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/25\/7\/960\/48983751\/bioinformatics_25_7_960.pdf","content-type":"application\/pdf","content-version":"vor","intended-application":"syndication"},{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article-pdf\/25\/7\/960\/48983751\/bioinformatics_25_7_960.pdf","content-type":"unspecified","content-version":"vor","intended-application":"similarity-checking"}],"deposited":{"date-parts":[[2023,1,31]],"date-time":"2023-01-31T20:21:20Z","timestamp":1675196480000},"score":1,"resource":{"primary":{"URL":"https:\/\/academic.oup.com\/bioinformatics\/article\/25\/7\/960\/211544"}},"subtitle":[],"short-title":[],"issued":{"date-parts":[[2009,2,20]]},"references-count":10,"journal-issue":{"issue":"7","published-print":{"date-parts":[[2009,4,1]]}},"URL":"https:\/\/doi.org\/10.1093\/bioinformatics\/btp096","relation":{},"ISSN":["1367-4811","1367-4803"],"issn-type":[{"value":"1367-4811","type":"electronic"},{"value":"1367-4803","type":"print"}],"subject":[],"published-other":{"date-parts":[[2009,4,1]]},"published":{"date-parts":[[2009,2,20]]}}}