{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,7]],"date-time":"2025-11-07T08:50:47Z","timestamp":1762505447426},"reference-count":14,"publisher":"Oxford University Press (OUP)","issue":"7","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2771,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2009,4,1]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary:DIYA (Do-It-Yourself Annotator) is a modular and configurable open source pipeline software, written in Perl, used for the rapid annotation of bacterial genome sequences. The software is currently used to take DNA contigs as input, either in the form of complete genomes or the result of shotgun sequencing, and produce an annotated sequence in Genbank file format as output.<\/jats:p>\n               <jats:p>Availability: Distribution and source code are available at (https:\/\/sourceforge.net\/projects\/diyg\/).<\/jats:p>\n               <jats:p>Contact: \u00a0tread@emory.edu<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btp097","type":"journal-article","created":{"date-parts":[[2009,3,3]],"date-time":"2009-03-03T01:24:53Z","timestamp":1236043493000},"page":"962-963","source":"Crossref","is-referenced-by-count":69,"title":["DIYA: a bacterial annotation pipeline for any genomics lab"],"prefix":"10.1093","volume":"25","author":[{"given":"Andrew C.","family":"Stewart","sequence":"first","affiliation":[{"name":"1 Genomics Department, Biological Defense Research Directorate, Naval Medical Research Center, Rockville, MD and 2The BioTeam Inc., Middleton, MA, USA"}]},{"given":"Brian","family":"Osborne","sequence":"additional","affiliation":[{"name":"1 Genomics Department, Biological Defense Research Directorate, Naval Medical Research Center, Rockville, MD and 2The BioTeam Inc., Middleton, MA, USA"}]},{"given":"Timothy D.","family":"Read","sequence":"additional","affiliation":[{"name":"1 Genomics Department, Biological Defense Research Directorate, Naval Medical Research Center, Rockville, MD and 2The BioTeam Inc., Middleton, MA, USA"}]}],"member":"286","published-online":{"date-parts":[[2009,3,2]]},"reference":[{"key":"2023013110165541700_B1","doi-asserted-by":"crossref","first-page":"2832","DOI":"10.1093\/bioinformatics\/bth273","article-title":"A system for automated bacterial (genome) integrated annotation\u2013sabia","volume":"20","author":"Almeida","year":"2004","journal-title":"Bioinformatics"},{"key":"2023013110165541700_B2","doi-asserted-by":"crossref","first-page":"403","DOI":"10.1016\/S0022-2836(05)80360-2","article-title":"Basic local alignment search tool","volume":"215","author":"Altschul","year":"1990","journal-title":"J. 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