{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2026,4,11]],"date-time":"2026-04-11T07:00:50Z","timestamp":1775890850461,"version":"3.50.1"},"reference-count":11,"publisher":"Oxford University Press (OUP)","issue":"8","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2778,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2009,4,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: We have developed ClueGO, an easy to use Cytoscape plug-in that strongly improves biological interpretation of large lists of genes. ClueGO integrates Gene Ontology (GO) terms as well as KEGG\/BioCarta pathways and creates a functionally organized GO\/pathway term network. It can analyze one or compare two lists of genes and comprehensively visualizes functionally grouped terms. A one-click update option allows ClueGO to automatically download the most recent GO\/KEGG release at any time. ClueGO provides an intuitive representation of the analysis results and can be optionally used in conjunction with the GOlorize plug-in.<\/jats:p>\n               <jats:p>Availability: \u00a0http:\/\/www.ici.upmc.fr\/cluego\/cluegoDownload.shtml<\/jats:p>\n               <jats:p>Contact: \u00a0jerome.galon@crc.jussieu.fr<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online.<\/jats:p>","DOI":"10.1093\/bioinformatics\/btp101","type":"journal-article","created":{"date-parts":[[2009,2,23]],"date-time":"2009-02-23T20:26:06Z","timestamp":1235420766000},"page":"1091-1093","source":"Crossref","is-referenced-by-count":5618,"title":["ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks"],"prefix":"10.1093","volume":"25","author":[{"given":"Gabriela","family":"Bindea","sequence":"first","affiliation":[{"name":"1\u20134 \u00a01INSERM, AVENIR Team, Integrative Cancer Immunology, U872, 75006 Paris, 2Universit\u00e9 Paris Descartes, 3Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, Paris, France, 4Institute for Genomics and Bioinformatics, Graz University of Technology, Graz, Austria and 5Assistance Publique-H\u00f4pitaux de Paris, HEGP, Paris, France"}]},{"given":"Bernhard","family":"Mlecnik","sequence":"additional","affiliation":[{"name":"1\u20134 \u00a01INSERM, AVENIR Team, Integrative Cancer Immunology, U872, 75006 Paris, 2Universit\u00e9 Paris Descartes, 3Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, Paris, France, 4Institute for Genomics and Bioinformatics, Graz University of Technology, Graz, Austria and 5Assistance Publique-H\u00f4pitaux de Paris, HEGP, Paris, France"}]},{"given":"Hubert","family":"Hackl","sequence":"additional","affiliation":[{"name":"1\u20134 \u00a01INSERM, AVENIR Team, Integrative Cancer Immunology, U872, 75006 Paris, 2Universit\u00e9 Paris Descartes, 3Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, Paris, France, 4Institute for Genomics and Bioinformatics, Graz University of Technology, Graz, Austria and 5Assistance Publique-H\u00f4pitaux de Paris, HEGP, Paris, France"}]},{"given":"Pornpimol","family":"Charoentong","sequence":"additional","affiliation":[{"name":"1\u20134 \u00a01INSERM, AVENIR Team, Integrative Cancer Immunology, U872, 75006 Paris, 2Universit\u00e9 Paris Descartes, 3Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, Paris, France, 4Institute for Genomics and Bioinformatics, Graz University of Technology, Graz, Austria and 5Assistance Publique-H\u00f4pitaux de Paris, HEGP, Paris, France"}]},{"given":"Marie","family":"Tosolini","sequence":"additional","affiliation":[{"name":"1\u20134 \u00a01INSERM, AVENIR Team, Integrative Cancer Immunology, U872, 75006 Paris, 2Universit\u00e9 Paris Descartes, 3Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, Paris, France, 4Institute for Genomics and Bioinformatics, Graz University of Technology, Graz, Austria and 5Assistance Publique-H\u00f4pitaux de Paris, HEGP, Paris, France"}]},{"given":"Amos","family":"Kirilovsky","sequence":"additional","affiliation":[{"name":"1\u20134 \u00a01INSERM, AVENIR Team, Integrative Cancer Immunology, U872, 75006 Paris, 2Universit\u00e9 Paris Descartes, 3Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, Paris, France, 4Institute for Genomics and Bioinformatics, Graz University of Technology, Graz, Austria and 5Assistance Publique-H\u00f4pitaux de Paris, HEGP, Paris, France"}]},{"given":"Wolf-Herman","family":"Fridman","sequence":"additional","affiliation":[{"name":"1\u20134 \u00a01INSERM, AVENIR Team, Integrative Cancer Immunology, U872, 75006 Paris, 2Universit\u00e9 Paris Descartes, 3Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, Paris, France, 4Institute for Genomics and Bioinformatics, Graz University of Technology, Graz, Austria and 5Assistance Publique-H\u00f4pitaux de Paris, HEGP, Paris, France"},{"name":"1\u20134 \u00a01INSERM, AVENIR Team, Integrative Cancer Immunology, U872, 75006 Paris, 2Universit\u00e9 Paris Descartes, 3Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, Paris, France, 4Institute for Genomics and Bioinformatics, Graz University of Technology, Graz, Austria and 5Assistance Publique-H\u00f4pitaux de Paris, HEGP, Paris, France"}]},{"given":"Franck","family":"Pag\u00e8s","sequence":"additional","affiliation":[{"name":"1\u20134 \u00a01INSERM, AVENIR Team, Integrative Cancer Immunology, U872, 75006 Paris, 2Universit\u00e9 Paris Descartes, 3Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, Paris, France, 4Institute for Genomics and Bioinformatics, Graz University of Technology, Graz, Austria and 5Assistance Publique-H\u00f4pitaux de Paris, HEGP, Paris, France"},{"name":"1\u20134 \u00a01INSERM, AVENIR Team, Integrative Cancer Immunology, U872, 75006 Paris, 2Universit\u00e9 Paris Descartes, 3Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, Paris, France, 4Institute for Genomics and Bioinformatics, Graz University of Technology, Graz, Austria and 5Assistance Publique-H\u00f4pitaux de Paris, HEGP, Paris, France"}]},{"given":"Zlatko","family":"Trajanoski","sequence":"additional","affiliation":[{"name":"1\u20134 \u00a01INSERM, AVENIR Team, Integrative Cancer Immunology, U872, 75006 Paris, 2Universit\u00e9 Paris Descartes, 3Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, Paris, France, 4Institute for Genomics and Bioinformatics, Graz University of Technology, Graz, Austria and 5Assistance Publique-H\u00f4pitaux de Paris, HEGP, Paris, France"}]},{"given":"J\u00e9r\u00f4me","family":"Galon","sequence":"additional","affiliation":[{"name":"1\u20134 \u00a01INSERM, AVENIR Team, Integrative Cancer Immunology, U872, 75006 Paris, 2Universit\u00e9 Paris Descartes, 3Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, Paris, France, 4Institute for Genomics and Bioinformatics, Graz University of Technology, Graz, Austria and 5Assistance Publique-H\u00f4pitaux de Paris, HEGP, Paris, France"},{"name":"1\u20134 \u00a01INSERM, AVENIR Team, Integrative Cancer Immunology, U872, 75006 Paris, 2Universit\u00e9 Paris Descartes, 3Universit\u00e9 Pierre et Marie Curie Paris 6, Cordeliers Research Center, Paris, France, 4Institute for Genomics and Bioinformatics, Graz University of Technology, Graz, Austria and 5Assistance Publique-H\u00f4pitaux de Paris, HEGP, Paris, France"}]}],"member":"286","published-online":{"date-parts":[[2009,2,23]]},"reference":[{"key":"2023051607020918000_B1","doi-asserted-by":"crossref","first-page":"25","DOI":"10.1038\/75556","article-title":"Gene ontology: tool for the unification of biology. 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