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A novel application of the Mauve aligner and viewer provides an automated reordering algorithm coupled with a powerful drill-down display allowing detailed exploration of results.<\/jats:p>\n               <jats:p>Availability: The software is available for download at http:\/\/gel.ahabs.wisc.edu\/mauve.<\/jats:p>\n               <jats:p>Contact: \u00a0rissman@wisc.edu<\/jats:p>\n               <jats:p>Supplementary information: \u00a0Supplementary data are available at Bioinformatics online and http:\/\/gel.ahabs.wisc.edu<\/jats:p>","DOI":"10.1093\/bioinformatics\/btp356","type":"journal-article","created":{"date-parts":[[2009,6,11]],"date-time":"2009-06-11T01:39:55Z","timestamp":1244684395000},"page":"2071-2073","source":"Crossref","is-referenced-by-count":510,"title":["Reordering contigs of draft genomes using the Mauve Aligner"],"prefix":"10.1093","volume":"25","author":[{"given":"Anna I.","family":"Rissman","sequence":"first","affiliation":[{"name":"1 Genome Evolution Laboratory, University of Wisconsin-Madison, 425G Henry Mall Suite 4400V, Madison, WI 53706 and 2 Genome Center, University of California-Davis, 451 Health Sciences Dr, Davis, CA 95616"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Bob","family":"Mau","sequence":"additional","affiliation":[{"name":"1 Genome Evolution Laboratory, University of Wisconsin-Madison, 425G Henry Mall Suite 4400V, Madison, WI 53706 and 2 Genome Center, University of California-Davis, 451 Health Sciences Dr, Davis, CA 95616"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Bryan S.","family":"Biehl","sequence":"additional","affiliation":[{"name":"1 Genome Evolution Laboratory, University of Wisconsin-Madison, 425G Henry Mall Suite 4400V, Madison, WI 53706 and 2 Genome Center, University of California-Davis, 451 Health Sciences Dr, Davis, CA 95616"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Aaron E.","family":"Darling","sequence":"additional","affiliation":[{"name":"1 Genome Evolution Laboratory, University of Wisconsin-Madison, 425G Henry Mall Suite 4400V, Madison, WI 53706 and 2 Genome Center, University of California-Davis, 451 Health Sciences Dr, Davis, CA 95616"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Jeremy D.","family":"Glasner","sequence":"additional","affiliation":[{"name":"1 Genome Evolution Laboratory, University of Wisconsin-Madison, 425G Henry Mall Suite 4400V, Madison, WI 53706 and 2 Genome Center, University of California-Davis, 451 Health Sciences Dr, Davis, CA 95616"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Nicole T.","family":"Perna","sequence":"additional","affiliation":[{"name":"1 Genome Evolution Laboratory, University of Wisconsin-Madison, 425G Henry Mall Suite 4400V, Madison, WI 53706 and 2 Genome Center, University of California-Davis, 451 Health Sciences Dr, Davis, CA 95616"}],"role":[{"role":"author","vocabulary":"crossref"}]}],"member":"286","published-online":{"date-parts":[[2009,6,10]]},"reference":[{"key":"2023013112091628700_B1","doi-asserted-by":"crossref","first-page":"1453","DOI":"10.1126\/science.277.5331.1453","article-title":"The complete genome sequence of Escherichia coli K-12","volume":"277","author":"Blattner","year":"1997","journal-title":"Science"},{"key":"2023013112091628700_B2","doi-asserted-by":"crossref","first-page":"1394","DOI":"10.1101\/gr.2289704","article-title":"Mauve: multiple alignment of conserved genomic sequence with rearrangements","volume":"14","author":"Darling","year":"2004","journal-title":"Genome Res."},{"key":"2023013112091628700_B3","doi-asserted-by":"crossref","first-page":"4601","DOI":"10.1128\/JB.184.16.4601-4611.2002","article-title":"Genome sequence of Yersinia pestis KIM","volume":"184","author":"Deng","year":"2002","journal-title":"J. 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