{"status":"ok","message-type":"work","message-version":"1.0.0","message":{"indexed":{"date-parts":[[2025,11,11]],"date-time":"2025-11-11T12:52:10Z","timestamp":1762865530341},"reference-count":8,"publisher":"Oxford University Press (OUP)","issue":"20","license":[{"start":{"date-parts":[[2016,10,2]],"date-time":"2016-10-02T00:00:00Z","timestamp":1475366400000},"content-version":"vor","delay-in-days":2627,"URL":"http:\/\/creativecommons.org\/licenses\/by-nc\/2.0\/uk\/"}],"content-domain":{"domain":[],"crossmark-restriction":false},"short-container-title":[],"published-print":{"date-parts":[[2009,10,15]]},"abstract":"<jats:title>Abstract<\/jats:title>\n               <jats:p>Summary: SIMBioMS is a web-based open source software system for managing data and information in biomedical studies. It provides a solution for the collection, storage, management and retrieval of information about research subjects and biomedical samples, as well as experimental data obtained using a range of high-throughput technologies, including gene expression, genotyping, proteomics and metabonomics. The system can easily be customized and has proven to be successful in several large-scale multi-site collaborative projects. It is compatible with emerging functional genomics data standards and provides data import and export in accepted standard formats. Protocols for transferring data to durable archives at the European Bioinformatics Institute have been implemented.<\/jats:p>\n               <jats:p>Availability: The source code, documentation and initialization scripts are available at http:\/\/simbioms.org.<\/jats:p>\n               <jats:p>Contact: \u00a0support@simbioms.org; mariak@ebi.ac.uk<\/jats:p>","DOI":"10.1093\/bioinformatics\/btp420","type":"journal-article","created":{"date-parts":[[2009,7,25]],"date-time":"2009-07-25T00:59:00Z","timestamp":1248483540000},"page":"2768-2769","source":"Crossref","is-referenced-by-count":25,"title":["A System for Information Management in BioMedical Studies\u2014SIMBioMS"],"prefix":"10.1093","volume":"25","author":[{"given":"Maria","family":"Krestyaninova","sequence":"first","affiliation":[{"name":"1 European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK, 2 Institute of Mathematics and Computer Science, Rainis Boulevard 29, Riga, LV 1459, Latvia, 3 NIHR-Cambridge Biomedical Research Centre, Genomics CoreLab, Institute of Metabolic Science, UK, 4 Institute for Molecular Medicine Finland FIMM, Biomedicum Helsinki 2U, 00290 Helsinki, Finland, 5 Oxford Centre for Diabetes, Endocrinology and Metabolism, Churchill Hospital, Old Road, Oxford OX3 7LJ, UK and 6 Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Headington, Oxford, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Andris","family":"Zarins","sequence":"additional","affiliation":[{"name":"1 European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK, 2 Institute of Mathematics and Computer Science, Rainis Boulevard 29, Riga, LV 1459, Latvia, 3 NIHR-Cambridge Biomedical Research Centre, Genomics CoreLab, Institute of Metabolic Science, UK, 4 Institute for Molecular Medicine Finland FIMM, Biomedicum Helsinki 2U, 00290 Helsinki, Finland, 5 Oxford Centre for Diabetes, Endocrinology and Metabolism, Churchill Hospital, Old Road, Oxford OX3 7LJ, UK and 6 Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Headington, Oxford, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Juris","family":"Viksna","sequence":"additional","affiliation":[{"name":"1 European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK, 2 Institute of Mathematics and Computer Science, Rainis Boulevard 29, Riga, LV 1459, Latvia, 3 NIHR-Cambridge Biomedical Research Centre, Genomics CoreLab, Institute of Metabolic Science, UK, 4 Institute for Molecular Medicine Finland FIMM, Biomedicum Helsinki 2U, 00290 Helsinki, Finland, 5 Oxford Centre for Diabetes, Endocrinology and Metabolism, Churchill Hospital, Old Road, Oxford OX3 7LJ, UK and 6 Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Headington, Oxford, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Natalja","family":"Kurbatova","sequence":"additional","affiliation":[{"name":"1 European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK, 2 Institute of Mathematics and Computer Science, Rainis Boulevard 29, Riga, LV 1459, Latvia, 3 NIHR-Cambridge Biomedical Research Centre, Genomics CoreLab, Institute of Metabolic Science, UK, 4 Institute for Molecular Medicine Finland FIMM, Biomedicum Helsinki 2U, 00290 Helsinki, Finland, 5 Oxford Centre for Diabetes, Endocrinology and Metabolism, Churchill Hospital, Old Road, Oxford OX3 7LJ, UK and 6 Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Headington, Oxford, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Peteris","family":"Rucevskis","sequence":"additional","affiliation":[{"name":"1 European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK, 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Biomedicum Helsinki 2U, 00290 Helsinki, Finland, 5 Oxford Centre for Diabetes, Endocrinology and Metabolism, Churchill Hospital, Old Road, Oxford OX3 7LJ, UK and 6 Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Headington, Oxford, UK"}],"role":[{"role":"author","vocabulary":"crossref"}]},{"given":"Mike","family":"Gostev","sequence":"additional","affiliation":[{"name":"1 European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK, 2 Institute of Mathematics and Computer Science, Rainis Boulevard 29, Riga, LV 1459, Latvia, 3 NIHR-Cambridge Biomedical Research Centre, Genomics CoreLab, Institute of Metabolic Science, UK, 4 Institute for Molecular Medicine Finland FIMM, Biomedicum Helsinki 2U, 00290 Helsinki, Finland, 5 Oxford Centre for Diabetes, Endocrinology and Metabolism, Churchill Hospital, Old Road, Oxford OX3 7LJ, UK and 6 Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, 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